Experiment: Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0530 and BT0531 are separated by 4 nucleotides BT0531 and BT0532 are separated by 68 nucleotides BT0532 and BT0533 are separated by 44 nucleotides
BT0530: BT0530 - anthranilate phosphoribosyltransferase (EC 2.4.2.18) <small>(from data)</small>, at 653,313 to 654,311
BT0530
BT0531: BT0531 - anthranilate synthase component II (NCBI ptt file), at 654,316 to 654,882
BT0531
BT0532: BT0532 - anthranilate synthase component I (NCBI ptt file), at 654,951 to 656,357
BT0532
BT0533: BT0533 - tryptophan synthase beta chain (NCBI ptt file), at 656,402 to 657,586
BT0533
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 653.973 kb on - strand, within BT0530 at 653.995 kb on - strand, within BT0530 at 654.154 kb on - strand, within BT0530 at 654.191 kb on + strand, within BT0530 at 654.248 kb on + strand at 654.250 kb on + strand at 654.251 kb on + strand at 654.275 kb on - strand at 654.293 kb on + strand at 654.296 kb on - strand at 654.416 kb on - strand, within BT0531 at 654.451 kb on + strand, within BT0531 at 654.541 kb on + strand, within BT0531 at 654.575 kb on - strand, within BT0531 at 654.688 kb on - strand, within BT0531 at 654.739 kb on + strand, within BT0531 at 654.999 kb on + strand at 655.000 kb on - strand at 655.011 kb on + strand at 655.250 kb on + strand at 655.333 kb on + strand, within BT0532 at 655.346 kb on + strand, within BT0532 at 655.363 kb on - strand, within BT0532 at 655.363 kb on - strand, within BT0532 at 655.797 kb on - strand, within BT0532 at 655.798 kb on + strand, within BT0532 at 655.917 kb on - strand, within BT0532 at 655.922 kb on + strand, within BT0532 at 655.922 kb on + strand, within BT0532 at 655.922 kb on + strand, within BT0532 at 655.922 kb on + strand, within BT0532 at 655.985 kb on + strand, within BT0532 at 656.151 kb on - strand, within BT0532 at 656.160 kb on + strand, within BT0532 at 656.160 kb on + strand, within BT0532 at 656.267 kb on - strand at 656.292 kb on - strand at 656.292 kb on - strand at 656.309 kb on + strand at 656.310 kb on - strand at 656.320 kb on - strand at 656.340 kb on - strand at 656.397 kb on + strand at 656.566 kb on - strand, within BT0533 at 656.762 kb on + strand, within BT0533 at 656.762 kb on + strand, within BT0533 at 656.842 kb on + strand, within BT0533 at 656.850 kb on + strand, within BT0533 at 657.024 kb on + strand, within BT0533 at 657.187 kb on + strand, within BT0533 at 657.212 kb on + strand, within BT0533 at 657.212 kb on + strand, within BT0533 at 657.213 kb on - strand, within BT0533 at 657.331 kb on + strand, within BT0533
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml remove 653,973 - BT0530 0.66 -2.0 653,995 - BT0530 0.68 -1.7 654,154 - BT0530 0.84 -0.8 654,191 + BT0530 0.88 -3.6 654,248 + -5.1 654,250 + -2.4 654,251 + -2.4 654,275 - -0.8 654,293 + -4.9 654,296 - -3.9 654,416 - BT0531 0.18 -0.6 654,451 + BT0531 0.24 -3.0 654,541 + BT0531 0.40 -3.1 654,575 - BT0531 0.46 -1.7 654,688 - BT0531 0.66 -2.7 654,739 + BT0531 0.75 -2.1 654,999 + -0.8 655,000 - -2.5 655,011 + -2.9 655,250 + -0.7 655,333 + BT0532 0.27 -5.9 655,346 + BT0532 0.28 -2.2 655,363 - BT0532 0.29 -2.2 655,363 - BT0532 0.29 -1.1 655,797 - BT0532 0.60 -4.9 655,798 + BT0532 0.60 -2.3 655,917 - BT0532 0.69 -2.7 655,922 + BT0532 0.69 -4.4 655,922 + BT0532 0.69 -4.1 655,922 + BT0532 0.69 -2.5 655,922 + BT0532 0.69 -2.3 655,985 + BT0532 0.73 -2.5 656,151 - BT0532 0.85 -1.3 656,160 + BT0532 0.86 -2.3 656,160 + BT0532 0.86 -2.0 656,267 - -1.7 656,292 - -1.1 656,292 - +0.5 656,309 + -5.6 656,310 - -0.1 656,320 - -0.8 656,340 - -3.1 656,397 + -2.2 656,566 - BT0533 0.14 -1.1 656,762 + BT0533 0.30 -3.6 656,762 + BT0533 0.30 -2.7 656,842 + BT0533 0.37 -2.2 656,850 + BT0533 0.38 -2.3 657,024 + BT0533 0.52 -1.8 657,187 + BT0533 0.66 -3.3 657,212 + BT0533 0.68 -2.4 657,212 + BT0533 0.68 -2.0 657,213 - BT0533 0.68 -2.4 657,331 + BT0533 0.78 -2.2
Or see this region's nucleotide sequence