Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07600

Experiment: D-Glucose 120 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07595 and BWI76_RS07600 are separated by 182 nucleotidesBWI76_RS07600 and BWI76_RS07605 are separated by 186 nucleotidesBWI76_RS07605 and BWI76_RS07610 are separated by 49 nucleotides BWI76_RS07595: BWI76_RS07595 - putative oxidoreductase, at 1,608,243 to 1,609,007 _RS07595 BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527 _RS07600 BWI76_RS07605: BWI76_RS07605 - N-acetyltransferase GCN5, at 1,610,714 to 1,611,409 _RS07605 BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123 _RS07610 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -1 0 1at 1608.249 kb on - strandat 1608.347 kb on - strand, within BWI76_RS07595at 1608.352 kb on + strand, within BWI76_RS07595at 1608.570 kb on - strand, within BWI76_RS07595at 1608.873 kb on - strand, within BWI76_RS07595at 1609.040 kb on + strandat 1609.215 kb on - strandat 1609.287 kb on + strandat 1609.588 kb on + strand, within BWI76_RS07600at 1609.588 kb on + strand, within BWI76_RS07600at 1609.588 kb on + strand, within BWI76_RS07600at 1609.596 kb on - strand, within BWI76_RS07600at 1609.779 kb on - strand, within BWI76_RS07600at 1610.576 kb on + strandat 1610.586 kb on + strandat 1610.697 kb on + strandat 1610.795 kb on + strand, within BWI76_RS07605at 1610.827 kb on + strand, within BWI76_RS07605at 1610.872 kb on - strand, within BWI76_RS07605at 1610.956 kb on + strand, within BWI76_RS07605at 1611.450 kb on + strandat 1611.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 120 mM (C)
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1,608,249 - +0.2
1,608,347 - BWI76_RS07595 0.14 +0.1
1,608,352 + BWI76_RS07595 0.14 -0.1
1,608,570 - BWI76_RS07595 0.43 +0.3
1,608,873 - BWI76_RS07595 0.82 -0.1
1,609,040 + -1.6
1,609,215 - -0.3
1,609,287 + +0.0
1,609,588 + BWI76_RS07600 0.30 +0.1
1,609,588 + BWI76_RS07600 0.30 -0.1
1,609,588 + BWI76_RS07600 0.30 +0.8
1,609,596 - BWI76_RS07600 0.30 +1.2
1,609,779 - BWI76_RS07600 0.44 -0.3
1,610,576 + +0.4
1,610,586 + -0.3
1,610,697 + -0.0
1,610,795 + BWI76_RS07605 0.12 -0.7
1,610,827 + BWI76_RS07605 0.16 +0.3
1,610,872 - BWI76_RS07605 0.23 -0.1
1,610,956 + BWI76_RS07605 0.35 +0.5
1,611,450 + +0.2
1,611,458 - -0.2

Or see this region's nucleotide sequence