Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4964 and Psyr_4965 are separated by 155 nucleotides Psyr_4965 and Psyr_4966 are separated by 92 nucleotides Psyr_4966 and Psyr_4967 are separated by 177 nucleotides Psyr_4967 and Psyr_4968 are separated by 152 nucleotides
Psyr_4964: Psyr_4964 - OmpA/MotB, at 5,887,089 to 5,889,581
_4964
Psyr_4965: Psyr_4965 - Protein of unknown function DUF796, at 5,889,737 to 5,890,255
_4965
Psyr_4966: Psyr_4966 - ImpA, N-terminal, at 5,890,348 to 5,891,442
_4966
Psyr_4967: Psyr_4967 - conserved hypothetical protein, at 5,891,620 to 5,892,045
_4967
Psyr_4968: Psyr_4968 - hypothetical protein, at 5,892,198 to 5,892,530
_4968
Position (kb) 5890
5891
5892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5889.420 kb on + strand at 5889.420 kb on + strand at 5889.421 kb on - strand at 5889.421 kb on - strand at 5889.421 kb on - strand at 5889.565 kb on + strand at 5889.566 kb on - strand at 5889.620 kb on + strand at 5889.713 kb on + strand at 5889.713 kb on + strand at 5889.714 kb on - strand at 5889.714 kb on - strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5890.028 kb on + strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.246 kb on - strand at 5890.246 kb on - strand at 5890.246 kb on - strand at 5890.253 kb on + strand at 5890.253 kb on + strand at 5890.253 kb on + strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.619 kb on - strand, within Psyr_4966 at 5890.619 kb on - strand, within Psyr_4966 at 5890.713 kb on - strand at 5890.713 kb on - strand, within Psyr_4966 at 5890.979 kb on - strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966 at 5891.315 kb on - strand, within Psyr_4966 at 5891.315 kb on - strand, within Psyr_4966 at 5891.433 kb on + strand at 5891.434 kb on - strand at 5891.434 kb on - strand at 5891.441 kb on - strand at 5891.453 kb on + strand at 5891.466 kb on + strand at 5891.467 kb on - strand at 5891.467 kb on - strand at 5891.479 kb on - strand at 5891.520 kb on - strand at 5891.541 kb on + strand at 5891.541 kb on + strand at 5891.548 kb on - strand at 5891.559 kb on + strand at 5891.559 kb on + strand at 5891.615 kb on - strand at 5891.950 kb on - strand, within Psyr_4967 at 5891.959 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.978 kb on - strand, within Psyr_4967 at 5891.983 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.987 kb on - strand, within Psyr_4967 at 5892.119 kb on + strand at 5892.120 kb on - strand at 5892.162 kb on - strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.201 kb on + strand at 5892.201 kb on + strand at 5892.202 kb on - strand at 5892.238 kb on + strand, within Psyr_4968 at 5892.239 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.331 kb on + strand, within Psyr_4968 at 5892.332 kb on - strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.341 kb on - strand, within Psyr_4968 at 5892.376 kb on - strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 5,889,420 + -1.5 5,889,420 + -0.3 5,889,421 - +0.3 5,889,421 - -2.0 5,889,421 - +1.0 5,889,565 + +0.4 5,889,566 - +1.1 5,889,620 + +0.6 5,889,713 + +0.5 5,889,713 + -0.2 5,889,714 - -1.3 5,889,714 - +0.4 5,889,752 + +0.8 5,889,752 + -0.0 5,889,752 + +1.7 5,889,752 + +0.0 5,889,752 + +0.6 5,889,752 + +0.4 5,889,752 + -3.6 5,889,752 + -0.6 5,889,752 + -1.1 5,889,752 + +2.2 5,889,753 - -0.2 5,889,753 - +1.2 5,889,753 - -0.8 5,889,753 - +0.6 5,889,753 - -0.4 5,889,753 - -0.6 5,889,753 - -0.2 5,889,753 - +0.1 5,889,753 - +0.1 5,889,753 - +0.8 5,889,753 - +0.0 5,889,753 - -1.0 5,889,753 - +2.8 5,889,753 - -0.4 5,889,753 - +1.1 5,889,753 - +1.6 5,889,753 - +2.9 5,889,753 - +0.7 5,889,753 - -0.6 5,890,028 + Psyr_4965 0.56 -0.6 5,890,029 - Psyr_4965 0.56 -0.6 5,890,029 - Psyr_4965 0.56 +0.8 5,890,029 - Psyr_4965 0.56 +0.8 5,890,029 - Psyr_4965 0.56 -2.0 5,890,029 - Psyr_4965 0.56 -4.2 5,890,029 - Psyr_4965 0.56 -0.6 5,890,029 - Psyr_4965 0.56 -0.7 5,890,169 + Psyr_4965 0.83 +0.7 5,890,169 + Psyr_4965 0.83 +0.4 5,890,169 + Psyr_4965 0.83 -0.2 5,890,169 + Psyr_4965 0.83 +0.6 5,890,169 + Psyr_4965 0.83 -0.4 5,890,169 + Psyr_4965 0.83 +1.3 5,890,170 - Psyr_4965 0.83 +0.2 5,890,170 - Psyr_4965 0.83 +0.1 5,890,170 - Psyr_4965 0.83 +0.6 5,890,170 - Psyr_4965 0.83 -0.3 5,890,245 + -0.2 5,890,245 + +0.7 5,890,245 + -1.5 5,890,245 + +0.6 5,890,245 + -0.3 5,890,246 - -0.2 5,890,246 - -1.6 5,890,246 - +0.8 5,890,253 + -2.4 5,890,253 + +0.9 5,890,253 + +0.4 5,890,254 - -1.1 5,890,254 - +0.4 5,890,254 - -0.1 5,890,254 - -0.2 5,890,254 - -2.4 5,890,347 + +0.4 5,890,347 + -1.2 5,890,347 + +0.9 5,890,347 + +0.9 5,890,347 + -0.4 5,890,347 + +0.9 5,890,348 - -0.4 5,890,348 - -1.5 5,890,348 - +1.1 5,890,348 - -1.4 5,890,348 - -1.1 5,890,348 - -0.5 5,890,618 + Psyr_4966 0.25 +0.2 5,890,618 + Psyr_4966 0.25 +0.1 5,890,618 + Psyr_4966 0.25 -0.9 5,890,618 + Psyr_4966 0.25 +1.4 5,890,618 + Psyr_4966 0.25 +1.3 5,890,618 + Psyr_4966 0.25 -1.1 5,890,618 + Psyr_4966 0.25 -1.1 5,890,619 - Psyr_4966 0.25 +1.6 5,890,619 - Psyr_4966 0.25 -1.2 5,890,713 - +1.5 5,890,713 - Psyr_4966 0.33 -1.1 5,890,979 - Psyr_4966 0.58 -1.3 5,891,057 + Psyr_4966 0.65 +0.7 5,891,057 + Psyr_4966 0.65 +0.9 5,891,057 + Psyr_4966 0.65 +1.2 5,891,058 - Psyr_4966 0.65 +0.5 5,891,058 - Psyr_4966 0.65 -0.2 5,891,058 - Psyr_4966 0.65 +0.9 5,891,315 - Psyr_4966 0.88 +1.1 5,891,315 - Psyr_4966 0.88 +0.0 5,891,433 + +0.6 5,891,434 - +1.6 5,891,434 - -0.8 5,891,441 - +1.2 5,891,453 + +0.9 5,891,466 + -0.1 5,891,467 - +0.3 5,891,467 - +0.8 5,891,479 - -1.5 5,891,520 - +0.9 5,891,541 + +0.7 5,891,541 + -0.3 5,891,548 - +0.2 5,891,559 + +0.4 5,891,559 + +0.2 5,891,615 - -0.1 5,891,950 - Psyr_4967 0.77 -0.3 5,891,959 + Psyr_4967 0.80 +1.4 5,891,977 + Psyr_4967 0.84 +0.4 5,891,977 + Psyr_4967 0.84 +0.3 5,891,977 + Psyr_4967 0.84 -0.4 5,891,978 - Psyr_4967 0.84 -0.5 5,891,983 + Psyr_4967 0.85 -0.1 5,891,986 + Psyr_4967 0.86 -0.6 5,891,986 + Psyr_4967 0.86 -1.9 5,891,987 - Psyr_4967 0.86 -1.0 5,892,119 + -1.9 5,892,120 - +0.4 5,892,162 - -1.3 5,892,165 + -1.1 5,892,165 + -0.2 5,892,165 + -0.5 5,892,165 + -1.1 5,892,166 - +0.5 5,892,166 - +0.2 5,892,166 - -1.4 5,892,201 + +0.4 5,892,201 + +0.0 5,892,202 - +1.0 5,892,238 + Psyr_4968 0.12 -0.1 5,892,239 - Psyr_4968 0.12 +0.1 5,892,303 - Psyr_4968 0.32 -1.1 5,892,303 - Psyr_4968 0.32 +0.7 5,892,331 + Psyr_4968 0.40 -0.7 5,892,332 - Psyr_4968 0.40 +0.8 5,892,336 + Psyr_4968 0.41 +1.3 5,892,336 + Psyr_4968 0.41 -0.1 5,892,336 + Psyr_4968 0.41 -0.3 5,892,337 - Psyr_4968 0.42 -0.6 5,892,337 - Psyr_4968 0.42 -1.2 5,892,337 - Psyr_4968 0.42 -0.0 5,892,337 - Psyr_4968 0.42 -1.8 5,892,341 - Psyr_4968 0.43 +1.0 5,892,376 - Psyr_4968 0.53 -0.4 5,892,420 + Psyr_4968 0.67 +0.2 5,892,420 + Psyr_4968 0.67 -2.6 5,892,420 + Psyr_4968 0.67 +1.0 5,892,421 - Psyr_4968 0.67 -0.2 5,892,421 - Psyr_4968 0.67 +0.8 5,892,421 - Psyr_4968 0.67 +0.4 5,892,421 - Psyr_4968 0.67 -1.1 5,892,421 - Psyr_4968 0.67 -0.1
Or see this region's nucleotide sequence