Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4788 and Psyr_4789 are separated by 334 nucleotides Psyr_4789 and Psyr_4790 are separated by 27 nucleotides Psyr_4790 and Psyr_4791 are separated by 22 nucleotides
Psyr_4788: Psyr_4788 - lipoprotein, putative, at 5,676,236 to 5,676,562
_4788
Psyr_4789: Psyr_4789 - lipoprotein, putative, at 5,676,897 to 5,677,127
_4789
Psyr_4790: Psyr_4790 - phosphoglycerate kinase, at 5,677,155 to 5,678,318
_4790
Psyr_4791: Psyr_4791 - D-erythrose-4-phosphate dehydrogenase, at 5,678,341 to 5,679,384
_4791
Position (kb) 5677
5678
5679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5676.170 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.238 kb on - strand at 5676.238 kb on - strand at 5676.286 kb on - strand, within Psyr_4788 at 5676.468 kb on - strand, within Psyr_4788 at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.838 kb on - strand at 5676.909 kb on + strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.971 kb on - strand, within Psyr_4789 at 5676.971 kb on - strand, within Psyr_4789 at 5677.017 kb on + strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5677.090 kb on - strand, within Psyr_4789 at 5677.384 kb on - strand, within Psyr_4790 at 5678.623 kb on - strand, within Psyr_4791 at 5678.623 kb on - strand, within Psyr_4791 at 5679.174 kb on - strand, within Psyr_4791
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 5,676,170 - -0.1 5,676,192 - -2.1 5,676,192 - +1.9 5,676,192 - +3.5 5,676,192 - -1.6 5,676,194 - -0.2 5,676,194 - +1.1 5,676,194 - -0.1 5,676,194 - -0.1 5,676,194 - -0.5 5,676,194 - -0.1 5,676,194 - -1.9 5,676,194 - -0.4 5,676,194 - -1.3 5,676,194 - +0.6 5,676,194 - +0.3 5,676,238 - +1.2 5,676,238 - +1.5 5,676,286 - Psyr_4788 0.15 -1.2 5,676,468 - Psyr_4788 0.71 -0.0 5,676,564 - -0.6 5,676,564 - +1.1 5,676,564 - +0.9 5,676,564 - -0.3 5,676,564 - -0.5 5,676,564 - -0.1 5,676,564 - -0.9 5,676,775 - +0.1 5,676,775 - -1.3 5,676,775 - +0.4 5,676,775 - +1.1 5,676,838 - +0.3 5,676,909 + +0.9 5,676,910 - +0.9 5,676,910 - +0.4 5,676,910 - -3.5 5,676,910 - +1.1 5,676,910 - +1.1 5,676,910 - -1.4 5,676,910 - -0.8 5,676,910 - -2.4 5,676,910 - -0.7 5,676,910 - -0.9 5,676,910 - -0.2 5,676,910 - -2.3 5,676,910 - +1.2 5,676,910 - +0.3 5,676,910 - +0.2 5,676,949 - Psyr_4789 0.23 +0.5 5,676,949 - Psyr_4789 0.23 -1.0 5,676,949 - Psyr_4789 0.23 +0.4 5,676,949 - Psyr_4789 0.23 -0.9 5,676,971 - Psyr_4789 0.32 -0.4 5,676,971 - Psyr_4789 0.32 -0.5 5,677,017 + Psyr_4789 0.52 -0.3 5,677,018 - Psyr_4789 0.52 -0.6 5,677,090 - Psyr_4789 0.84 -2.6 5,677,384 - Psyr_4790 0.20 -1.7 5,678,623 - Psyr_4791 0.27 -0.1 5,678,623 - Psyr_4791 0.27 -0.1 5,679,174 - Psyr_4791 0.80 -1.7
Or see this region's nucleotide sequence