Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4315 and Psyr_4316 are separated by 236 nucleotides Psyr_4316 and Psyr_4317 are separated by 74 nucleotides
Psyr_4315: Psyr_4315 - Asparagine synthase, glutamine-hydrolyzing, at 5,164,033 to 5,166,009
_4315
Psyr_4316: Psyr_4316 - conserved hypothetical protein, at 5,166,246 to 5,166,491
_4316
Psyr_4317: Psyr_4317 - Probable taurine catabolism dioxygenase-like protein, at 5,166,566 to 5,167,579
_4317
Position (kb) 5166
5167
5168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5165.601 kb on + strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.602 kb on - strand, within Psyr_4315 at 5165.605 kb on + strand, within Psyr_4315 at 5165.628 kb on - strand, within Psyr_4315 at 5165.758 kb on + strand, within Psyr_4315 at 5165.758 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.768 kb on + strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.769 kb on - strand, within Psyr_4315 at 5165.773 kb on - strand, within Psyr_4315 at 5165.773 kb on - strand, within Psyr_4315 at 5165.774 kb on + strand, within Psyr_4315 at 5165.774 kb on + strand, within Psyr_4315 at 5165.774 kb on + strand, within Psyr_4315 at 5165.775 kb on - strand, within Psyr_4315 at 5165.775 kb on - strand, within Psyr_4315 at 5165.775 kb on - strand, within Psyr_4315 at 5165.832 kb on + strand at 5165.833 kb on - strand at 5165.833 kb on - strand at 5165.853 kb on + strand at 5165.854 kb on - strand at 5165.857 kb on + strand at 5165.858 kb on - strand at 5165.887 kb on - strand at 5165.894 kb on + strand at 5165.894 kb on + strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5165.895 kb on - strand at 5166.181 kb on - strand at 5166.206 kb on + strand at 5166.207 kb on - strand at 5166.207 kb on - strand at 5166.282 kb on + strand, within Psyr_4316 at 5166.287 kb on + strand, within Psyr_4316 at 5166.321 kb on - strand, within Psyr_4316 at 5166.369 kb on - strand, within Psyr_4316 at 5166.379 kb on + strand, within Psyr_4316 at 5166.430 kb on - strand, within Psyr_4316 at 5166.431 kb on + strand, within Psyr_4316 at 5166.494 kb on - strand at 5166.544 kb on - strand at 5166.563 kb on - strand at 5166.563 kb on - strand at 5166.610 kb on - strand at 5166.656 kb on - strand at 5166.667 kb on - strand at 5166.667 kb on - strand at 5166.670 kb on - strand, within Psyr_4317 at 5166.691 kb on + strand, within Psyr_4317 at 5166.691 kb on + strand, within Psyr_4317 at 5166.805 kb on - strand, within Psyr_4317 at 5166.901 kb on - strand, within Psyr_4317 at 5166.947 kb on + strand, within Psyr_4317 at 5167.045 kb on + strand, within Psyr_4317 at 5167.048 kb on - strand, within Psyr_4317 at 5167.107 kb on + strand, within Psyr_4317 at 5167.108 kb on - strand, within Psyr_4317 at 5167.108 kb on - strand, within Psyr_4317 at 5167.108 kb on - strand, within Psyr_4317 at 5167.109 kb on + strand, within Psyr_4317 at 5167.110 kb on - strand, within Psyr_4317 at 5167.117 kb on + strand, within Psyr_4317 at 5167.118 kb on - strand, within Psyr_4317 at 5167.184 kb on - strand, within Psyr_4317 at 5167.295 kb on - strand, within Psyr_4317 at 5167.358 kb on + strand, within Psyr_4317 at 5167.358 kb on + strand, within Psyr_4317 at 5167.358 kb on + strand, within Psyr_4317 at 5167.358 kb on + strand, within Psyr_4317 at 5167.497 kb on - strand at 5167.603 kb on + strand at 5167.604 kb on - strand at 5167.626 kb on + strand at 5167.627 kb on - strand at 5167.627 kb on - strand at 5167.630 kb on + strand at 5167.674 kb on - strand at 5167.807 kb on + strand at 5167.808 kb on - strand at 5167.808 kb on - strand at 5167.830 kb on + strand at 5167.831 kb on - strand at 5167.872 kb on + strand at 5167.872 kb on + strand at 5167.872 kb on + strand at 5167.872 kb on + strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.873 kb on - strand at 5167.919 kb on + strand at 5167.937 kb on + strand at 5167.937 kb on + strand at 5168.009 kb on - strand at 5168.016 kb on + strand at 5168.016 kb on + strand at 5168.016 kb on + strand at 5168.016 kb on + strand at 5168.016 kb on + strand at 5168.017 kb on - strand at 5168.017 kb on - strand at 5168.017 kb on - strand at 5168.065 kb on + strand at 5168.065 kb on + strand at 5168.065 kb on + strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.066 kb on - strand at 5168.079 kb on + strand at 5168.156 kb on + strand at 5168.157 kb on - strand at 5168.228 kb on - strand at 5168.228 kb on - strand at 5168.271 kb on + strand at 5168.272 kb on - strand at 5168.272 kb on - strand at 5168.272 kb on - strand at 5168.275 kb on - strand at 5168.302 kb on + strand at 5168.350 kb on + strand at 5168.351 kb on - strand at 5168.405 kb on + strand at 5168.424 kb on + strand at 5168.438 kb on - strand at 5168.472 kb on + strand at 5168.472 kb on + strand at 5168.473 kb on - strand at 5168.473 kb on - strand at 5168.473 kb on - strand at 5168.473 kb on - strand at 5168.473 kb on - strand at 5168.476 kb on + strand at 5168.476 kb on + strand at 5168.477 kb on - strand at 5168.477 kb on - strand at 5168.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 5,165,601 + Psyr_4315 0.79 -0.5 5,165,602 - Psyr_4315 0.79 +0.9 5,165,602 - Psyr_4315 0.79 -1.7 5,165,602 - Psyr_4315 0.79 +1.5 5,165,602 - Psyr_4315 0.79 -1.8 5,165,602 - Psyr_4315 0.79 -0.1 5,165,605 + Psyr_4315 0.80 +4.1 5,165,628 - Psyr_4315 0.81 +0.2 5,165,758 + Psyr_4315 0.87 -1.4 5,165,758 + Psyr_4315 0.87 +0.4 5,165,768 + Psyr_4315 0.88 +1.0 5,165,768 + Psyr_4315 0.88 -0.7 5,165,769 - Psyr_4315 0.88 -1.8 5,165,769 - Psyr_4315 0.88 +1.8 5,165,769 - Psyr_4315 0.88 -0.3 5,165,773 - Psyr_4315 0.88 -1.2 5,165,773 - Psyr_4315 0.88 +0.1 5,165,774 + Psyr_4315 0.88 +0.4 5,165,774 + Psyr_4315 0.88 -0.9 5,165,774 + Psyr_4315 0.88 -0.8 5,165,775 - Psyr_4315 0.88 +0.8 5,165,775 - Psyr_4315 0.88 +0.2 5,165,775 - Psyr_4315 0.88 +1.8 5,165,832 + +1.5 5,165,833 - -1.5 5,165,833 - +1.0 5,165,853 + +1.2 5,165,854 - -0.1 5,165,857 + -1.9 5,165,858 - +1.4 5,165,887 - +0.2 5,165,894 + +0.1 5,165,894 + +2.2 5,165,895 - -0.6 5,165,895 - +1.8 5,165,895 - +0.5 5,165,895 - +1.5 5,166,181 - -0.6 5,166,206 + -1.5 5,166,207 - -0.5 5,166,207 - -1.6 5,166,282 + Psyr_4316 0.15 +0.8 5,166,287 + Psyr_4316 0.17 -2.7 5,166,321 - Psyr_4316 0.30 -0.2 5,166,369 - Psyr_4316 0.50 +0.8 5,166,379 + Psyr_4316 0.54 -0.9 5,166,430 - Psyr_4316 0.75 -1.0 5,166,431 + Psyr_4316 0.75 -1.4 5,166,494 - -1.7 5,166,544 - +0.1 5,166,563 - -1.0 5,166,563 - +2.4 5,166,610 - -0.7 5,166,656 - -0.6 5,166,667 - -2.1 5,166,667 - +0.2 5,166,670 - Psyr_4317 0.10 -1.0 5,166,691 + Psyr_4317 0.12 -0.9 5,166,691 + Psyr_4317 0.12 -2.4 5,166,805 - Psyr_4317 0.24 +0.7 5,166,901 - Psyr_4317 0.33 -0.9 5,166,947 + Psyr_4317 0.38 +0.6 5,167,045 + Psyr_4317 0.47 +1.4 5,167,048 - Psyr_4317 0.48 -0.2 5,167,107 + Psyr_4317 0.53 -0.8 5,167,108 - Psyr_4317 0.53 +0.8 5,167,108 - Psyr_4317 0.53 -0.2 5,167,108 - Psyr_4317 0.53 -0.8 5,167,109 + Psyr_4317 0.54 +0.5 5,167,110 - Psyr_4317 0.54 -1.5 5,167,117 + Psyr_4317 0.54 -1.2 5,167,118 - Psyr_4317 0.54 -0.2 5,167,184 - Psyr_4317 0.61 -0.7 5,167,295 - Psyr_4317 0.72 -0.1 5,167,358 + Psyr_4317 0.78 +0.8 5,167,358 + Psyr_4317 0.78 -2.2 5,167,358 + Psyr_4317 0.78 -0.7 5,167,358 + Psyr_4317 0.78 -2.2 5,167,497 - +0.6 5,167,603 + -0.1 5,167,604 - +0.8 5,167,626 + -3.2 5,167,627 - +0.3 5,167,627 - -1.2 5,167,630 + +0.3 5,167,674 - -1.1 5,167,807 + -2.1 5,167,808 - +0.1 5,167,808 - -1.6 5,167,830 + -1.2 5,167,831 - -3.0 5,167,872 + -1.3 5,167,872 + -2.0 5,167,872 + +1.9 5,167,872 + -0.5 5,167,873 - +1.2 5,167,873 - +0.7 5,167,873 - +0.0 5,167,873 - -0.8 5,167,873 - -0.7 5,167,873 - +0.4 5,167,873 - -2.1 5,167,873 - -1.4 5,167,919 + -0.7 5,167,937 + +0.2 5,167,937 + -1.2 5,168,009 - -0.4 5,168,016 + -1.1 5,168,016 + -0.4 5,168,016 + -0.5 5,168,016 + +0.6 5,168,016 + -0.2 5,168,017 - -0.1 5,168,017 - +0.1 5,168,017 - -0.2 5,168,065 + +0.3 5,168,065 + -1.2 5,168,065 + -2.4 5,168,066 - +1.0 5,168,066 - +0.8 5,168,066 - -0.3 5,168,066 - -0.3 5,168,066 - -0.1 5,168,066 - +2.5 5,168,066 - -0.3 5,168,066 - +1.4 5,168,079 + +0.1 5,168,156 + +0.7 5,168,157 - -0.7 5,168,228 - -0.5 5,168,228 - +0.2 5,168,271 + -0.8 5,168,272 - +0.6 5,168,272 - -0.9 5,168,272 - -0.4 5,168,275 - +1.1 5,168,302 + +0.1 5,168,350 + +1.0 5,168,351 - -0.1 5,168,405 + +0.0 5,168,424 + -0.5 5,168,438 - +0.1 5,168,472 + +1.0 5,168,472 + -1.6 5,168,473 - -0.0 5,168,473 - +1.5 5,168,473 - -2.6 5,168,473 - -0.0 5,168,473 - +1.1 5,168,476 + -0.2 5,168,476 + +0.3 5,168,477 - -0.2 5,168,477 - +0.0 5,168,518 + +0.1
Or see this region's nucleotide sequence