Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3994 and Psyr_3995 are separated by 6 nucleotides Psyr_3995 and Psyr_3996 are separated by 225 nucleotides
Psyr_3994: Psyr_3994 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,754,002 to 4,755,759
_3994
Psyr_3995: Psyr_3995 - Helix-turn-helix, Fis-type, at 4,755,766 to 4,757,100
_3995
Psyr_3996: Psyr_3996 - PAS/PAC sensor hybrid histidine kinase, at 4,757,326 to 4,759,716
_3996
Position (kb) 4755
4756
4757
4758 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4754.815 kb on + strand, within Psyr_3994 at 4754.815 kb on + strand, within Psyr_3994 at 4754.815 kb on + strand, within Psyr_3994 at 4754.942 kb on + strand, within Psyr_3994 at 4754.942 kb on + strand, within Psyr_3994 at 4755.243 kb on + strand, within Psyr_3994 at 4755.243 kb on + strand, within Psyr_3994 at 4755.243 kb on + strand, within Psyr_3994 at 4755.243 kb on + strand, within Psyr_3994 at 4755.243 kb on + strand, within Psyr_3994 at 4755.244 kb on - strand, within Psyr_3994 at 4755.244 kb on - strand, within Psyr_3994 at 4755.244 kb on - strand, within Psyr_3994 at 4755.244 kb on - strand, within Psyr_3994 at 4755.244 kb on - strand, within Psyr_3994 at 4755.450 kb on - strand, within Psyr_3994 at 4755.659 kb on - strand at 4756.465 kb on + strand, within Psyr_3995 at 4756.465 kb on + strand, within Psyr_3995 at 4756.466 kb on - strand, within Psyr_3995 at 4756.466 kb on - strand, within Psyr_3995 at 4756.466 kb on - strand, within Psyr_3995 at 4756.673 kb on - strand, within Psyr_3995 at 4756.914 kb on + strand, within Psyr_3995 at 4756.914 kb on + strand, within Psyr_3995 at 4756.995 kb on + strand at 4756.996 kb on - strand at 4757.169 kb on + strand at 4757.170 kb on - strand at 4757.170 kb on - strand at 4757.170 kb on - strand at 4757.182 kb on + strand at 4757.182 kb on + strand at 4757.183 kb on - strand at 4757.183 kb on - strand at 4757.184 kb on + strand at 4757.184 kb on + strand at 4757.185 kb on - strand at 4757.185 kb on - strand at 4757.185 kb on - strand at 4757.185 kb on - strand at 4757.210 kb on + strand at 4757.210 kb on + strand at 4757.210 kb on + strand at 4757.293 kb on - strand at 4757.376 kb on + strand at 4757.376 kb on + strand at 4757.376 kb on + strand at 4757.376 kb on + strand at 4757.376 kb on + strand at 4757.376 kb on + strand at 4757.377 kb on - strand at 4757.377 kb on - strand at 4757.377 kb on - strand at 4757.377 kb on - strand at 4757.443 kb on + strand at 4757.443 kb on + strand at 4757.443 kb on + strand at 4757.443 kb on + strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.444 kb on - strand at 4757.488 kb on + strand at 4757.488 kb on + strand at 4757.693 kb on - strand, within Psyr_3996
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 4,754,815 + Psyr_3994 0.46 -2.4 4,754,815 + Psyr_3994 0.46 -1.8 4,754,815 + Psyr_3994 0.46 +1.2 4,754,942 + Psyr_3994 0.53 -0.2 4,754,942 + Psyr_3994 0.53 -0.8 4,755,243 + Psyr_3994 0.71 +0.1 4,755,243 + Psyr_3994 0.71 +1.2 4,755,243 + Psyr_3994 0.71 +0.7 4,755,243 + Psyr_3994 0.71 -0.4 4,755,243 + Psyr_3994 0.71 -0.5 4,755,244 - Psyr_3994 0.71 +0.2 4,755,244 - Psyr_3994 0.71 -2.1 4,755,244 - Psyr_3994 0.71 +0.2 4,755,244 - Psyr_3994 0.71 -0.5 4,755,244 - Psyr_3994 0.71 -0.8 4,755,450 - Psyr_3994 0.82 +1.2 4,755,659 - -1.0 4,756,465 + Psyr_3995 0.52 -1.3 4,756,465 + Psyr_3995 0.52 +0.8 4,756,466 - Psyr_3995 0.52 -0.1 4,756,466 - Psyr_3995 0.52 +0.9 4,756,466 - Psyr_3995 0.52 +0.1 4,756,673 - Psyr_3995 0.68 +3.3 4,756,914 + Psyr_3995 0.86 +0.5 4,756,914 + Psyr_3995 0.86 -0.2 4,756,995 + +1.0 4,756,996 - -1.0 4,757,169 + +0.0 4,757,170 - -0.7 4,757,170 - +0.4 4,757,170 - +0.4 4,757,182 + +0.7 4,757,182 + +0.2 4,757,183 - -0.3 4,757,183 - +0.1 4,757,184 + +0.2 4,757,184 + +0.1 4,757,185 - -0.4 4,757,185 - -1.0 4,757,185 - +0.0 4,757,185 - -0.4 4,757,210 + -0.1 4,757,210 + +0.3 4,757,210 + +0.1 4,757,293 - -0.2 4,757,376 + +1.4 4,757,376 + -0.8 4,757,376 + +0.7 4,757,376 + -0.0 4,757,376 + +1.4 4,757,376 + -1.8 4,757,377 - -0.8 4,757,377 - +2.2 4,757,377 - +0.4 4,757,377 - +1.5 4,757,443 + -2.4 4,757,443 + -0.4 4,757,443 + -0.3 4,757,443 + +0.2 4,757,444 - +0.7 4,757,444 - -1.7 4,757,444 - -0.0 4,757,444 - +0.2 4,757,444 - +0.3 4,757,444 - -2.1 4,757,444 - +0.2 4,757,444 - +0.3 4,757,444 - -0.4 4,757,444 - -0.3 4,757,444 - +1.9 4,757,488 + -0.4 4,757,488 + +1.6 4,757,693 - Psyr_3996 0.15 +2.7
Or see this region's nucleotide sequence