Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3874 and Psyr_3875 are separated by 77 nucleotides Psyr_3875 and Psyr_3876 overlap by 4 nucleotides Psyr_3876 and Psyr_3877 are separated by 12 nucleotides
Psyr_3874: Psyr_3874 - amino acid ABC transporter substrate-binding protein, PAAT family, at 4,615,411 to 4,616,193
_3874
Psyr_3875: Psyr_3875 - amino acid ABC transporter membrane protein 1, PAAT family, at 4,616,271 to 4,616,999
_3875
Psyr_3876: Psyr_3876 - amino acid ABC transporter membrane protein 2, PAAT family, at 4,616,996 to 4,617,706
_3876
Psyr_3877: Psyr_3877 - Succinylglutamate desuccinylase/aspartoacylase, at 4,617,719 to 4,618,837
_3877
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4616.009 kb on - strand, within Psyr_3874 at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.180 kb on - strand at 4616.180 kb on - strand at 4616.187 kb on + strand at 4616.188 kb on - strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.257 kb on - strand at 4616.257 kb on - strand at 4616.267 kb on - strand at 4616.267 kb on - strand at 4616.466 kb on + strand, within Psyr_3875 at 4616.466 kb on + strand, within Psyr_3875 at 4616.466 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.632 kb on - strand, within Psyr_3875 at 4616.632 kb on - strand, within Psyr_3875 at 4616.700 kb on + strand, within Psyr_3875 at 4616.701 kb on - strand, within Psyr_3875 at 4616.874 kb on + strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.886 kb on + strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.968 kb on - strand at 4616.968 kb on - strand at 4617.036 kb on - strand at 4617.036 kb on - strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.179 kb on + strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.214 kb on + strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.230 kb on + strand, within Psyr_3876 at 4617.231 kb on - strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.342 kb on - strand, within Psyr_3876 at 4617.342 kb on - strand, within Psyr_3876 at 4617.434 kb on + strand, within Psyr_3876 at 4617.435 kb on - strand, within Psyr_3876 at 4617.440 kb on + strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.482 kb on + strand, within Psyr_3876 at 4617.482 kb on + strand, within Psyr_3876 at 4617.483 kb on - strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.730 kb on + strand at 4617.731 kb on - strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.873 kb on - strand, within Psyr_3877 at 4618.111 kb on - strand, within Psyr_3877 at 4618.253 kb on + strand, within Psyr_3877 at 4618.253 kb on + strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877 at 4618.298 kb on + strand, within Psyr_3877 at 4618.299 kb on - strand, within Psyr_3877 at 4618.508 kb on + strand, within Psyr_3877 at 4618.509 kb on - strand, within Psyr_3877 at 4618.509 kb on - strand, within Psyr_3877
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 4,616,009 - Psyr_3874 0.76 -0.2 4,616,137 + +0.5 4,616,137 + +0.7 4,616,137 + -0.3 4,616,137 + +0.7 4,616,138 - -0.6 4,616,138 - +2.3 4,616,138 - +0.4 4,616,138 - -0.8 4,616,180 - +0.2 4,616,180 - +0.5 4,616,187 + +1.0 4,616,188 - +0.3 4,616,191 + -0.1 4,616,191 + -0.6 4,616,191 + +1.5 4,616,192 - +0.4 4,616,192 - -0.9 4,616,192 - +1.2 4,616,192 - -0.0 4,616,192 - +0.2 4,616,257 - +1.0 4,616,257 - +1.4 4,616,267 - -0.6 4,616,267 - -1.2 4,616,466 + Psyr_3875 0.27 -1.4 4,616,466 + Psyr_3875 0.27 +1.0 4,616,466 + Psyr_3875 0.27 +0.7 4,616,571 + Psyr_3875 0.41 +0.2 4,616,571 + Psyr_3875 0.41 +1.5 4,616,571 + Psyr_3875 0.41 +0.3 4,616,571 + Psyr_3875 0.41 +1.0 4,616,571 + Psyr_3875 0.41 -1.0 4,616,572 - Psyr_3875 0.41 +1.2 4,616,572 - Psyr_3875 0.41 -3.1 4,616,572 - Psyr_3875 0.41 -1.1 4,616,572 - Psyr_3875 0.41 -0.6 4,616,622 + Psyr_3875 0.48 -0.2 4,616,622 + Psyr_3875 0.48 -0.4 4,616,622 + Psyr_3875 0.48 -1.6 4,616,622 + Psyr_3875 0.48 -3.0 4,616,623 - Psyr_3875 0.48 -1.1 4,616,623 - Psyr_3875 0.48 +0.7 4,616,623 - Psyr_3875 0.48 -0.5 4,616,623 - Psyr_3875 0.48 -0.8 4,616,632 - Psyr_3875 0.50 +0.3 4,616,632 - Psyr_3875 0.50 +1.0 4,616,700 + Psyr_3875 0.59 -1.0 4,616,701 - Psyr_3875 0.59 -1.7 4,616,874 + Psyr_3875 0.83 -0.4 4,616,875 - Psyr_3875 0.83 +0.7 4,616,886 + Psyr_3875 0.84 +0.3 4,616,887 - Psyr_3875 0.84 -1.1 4,616,887 - Psyr_3875 0.84 -0.3 4,616,887 - Psyr_3875 0.84 +1.5 4,616,913 + Psyr_3875 0.88 +0.3 4,616,913 + Psyr_3875 0.88 -1.5 4,616,914 - Psyr_3875 0.88 +0.8 4,616,914 - Psyr_3875 0.88 -0.1 4,616,914 - Psyr_3875 0.88 -2.6 4,616,968 - -1.6 4,616,968 - -2.8 4,617,036 - -2.1 4,617,036 - -2.1 4,617,037 + +0.2 4,617,037 + -1.8 4,617,037 + -0.6 4,617,037 + +0.7 4,617,037 + +0.8 4,617,037 + -1.2 4,617,037 + -0.3 4,617,037 + +0.7 4,617,037 + +0.0 4,617,038 - +2.4 4,617,038 - -0.1 4,617,179 + Psyr_3876 0.26 -1.7 4,617,180 - Psyr_3876 0.26 -0.1 4,617,185 + Psyr_3876 0.27 +0.6 4,617,185 + Psyr_3876 0.27 +0.6 4,617,185 + Psyr_3876 0.27 -2.5 4,617,186 - Psyr_3876 0.27 -0.3 4,617,186 - Psyr_3876 0.27 -0.9 4,617,186 - Psyr_3876 0.27 +1.1 4,617,209 + Psyr_3876 0.30 -0.3 4,617,209 + Psyr_3876 0.30 +0.3 4,617,209 + Psyr_3876 0.30 -0.2 4,617,209 + Psyr_3876 0.30 +0.3 4,617,209 + Psyr_3876 0.30 -0.5 4,617,209 + Psyr_3876 0.30 -1.3 4,617,209 + Psyr_3876 0.30 +0.7 4,617,209 + Psyr_3876 0.30 +0.2 4,617,209 + Psyr_3876 0.30 -0.4 4,617,209 + Psyr_3876 0.30 -0.8 4,617,209 + Psyr_3876 0.30 +3.3 4,617,209 + Psyr_3876 0.30 -2.5 4,617,210 - Psyr_3876 0.30 +0.7 4,617,210 - Psyr_3876 0.30 +0.7 4,617,210 - Psyr_3876 0.30 +1.0 4,617,210 - Psyr_3876 0.30 -0.0 4,617,210 - Psyr_3876 0.30 +0.2 4,617,210 - Psyr_3876 0.30 -1.7 4,617,210 - Psyr_3876 0.30 -0.3 4,617,210 - Psyr_3876 0.30 -0.9 4,617,210 - Psyr_3876 0.30 -1.1 4,617,210 - Psyr_3876 0.30 +0.2 4,617,210 - Psyr_3876 0.30 -0.7 4,617,210 - Psyr_3876 0.30 -0.3 4,617,211 + Psyr_3876 0.30 -1.1 4,617,211 + Psyr_3876 0.30 +0.8 4,617,212 - Psyr_3876 0.30 -3.2 4,617,212 - Psyr_3876 0.30 -0.9 4,617,213 + Psyr_3876 0.31 +0.7 4,617,213 + Psyr_3876 0.31 +1.0 4,617,213 + Psyr_3876 0.31 -0.0 4,617,213 + Psyr_3876 0.31 -3.3 4,617,213 + Psyr_3876 0.31 -1.2 4,617,213 + Psyr_3876 0.31 +1.1 4,617,213 + Psyr_3876 0.31 -0.7 4,617,213 + Psyr_3876 0.31 -3.4 4,617,213 + Psyr_3876 0.31 -0.0 4,617,213 + Psyr_3876 0.31 -0.1 4,617,214 + Psyr_3876 0.31 +0.8 4,617,214 - Psyr_3876 0.31 -1.5 4,617,214 - Psyr_3876 0.31 -0.8 4,617,214 - Psyr_3876 0.31 -0.3 4,617,214 - Psyr_3876 0.31 -0.3 4,617,214 - Psyr_3876 0.31 +0.1 4,617,214 - Psyr_3876 0.31 +0.0 4,617,214 - Psyr_3876 0.31 +1.2 4,617,214 - Psyr_3876 0.31 +0.4 4,617,214 - Psyr_3876 0.31 +3.2 4,617,214 - Psyr_3876 0.31 -0.6 4,617,214 - Psyr_3876 0.31 +0.5 4,617,214 - Psyr_3876 0.31 +0.1 4,617,214 - Psyr_3876 0.31 -0.3 4,617,214 - Psyr_3876 0.31 -0.1 4,617,214 - Psyr_3876 0.31 +1.0 4,617,214 - Psyr_3876 0.31 -0.3 4,617,214 - Psyr_3876 0.31 +0.7 4,617,230 + Psyr_3876 0.33 +0.0 4,617,231 - Psyr_3876 0.33 -1.2 4,617,242 + Psyr_3876 0.35 -2.5 4,617,242 + Psyr_3876 0.35 +0.2 4,617,243 - Psyr_3876 0.35 +1.2 4,617,243 - Psyr_3876 0.35 -1.3 4,617,243 - Psyr_3876 0.35 +0.7 4,617,243 - Psyr_3876 0.35 -0.2 4,617,342 - Psyr_3876 0.49 -0.8 4,617,342 - Psyr_3876 0.49 +0.7 4,617,434 + Psyr_3876 0.62 -0.0 4,617,435 - Psyr_3876 0.62 +1.0 4,617,440 + Psyr_3876 0.62 -3.0 4,617,441 - Psyr_3876 0.63 -0.1 4,617,441 - Psyr_3876 0.63 -1.2 4,617,482 + Psyr_3876 0.68 +1.1 4,617,482 + Psyr_3876 0.68 -1.8 4,617,483 - Psyr_3876 0.68 +2.3 4,617,495 + Psyr_3876 0.70 +1.1 4,617,495 + Psyr_3876 0.70 -0.3 4,617,495 + Psyr_3876 0.70 -1.0 4,617,495 + Psyr_3876 0.70 -0.0 4,617,495 + Psyr_3876 0.70 -0.8 4,617,496 - Psyr_3876 0.70 -2.3 4,617,496 - Psyr_3876 0.70 -0.1 4,617,496 - Psyr_3876 0.70 +0.9 4,617,496 - Psyr_3876 0.70 -0.6 4,617,496 - Psyr_3876 0.70 -0.5 4,617,496 - Psyr_3876 0.70 -0.9 4,617,496 - Psyr_3876 0.70 -1.2 4,617,496 - Psyr_3876 0.70 +1.1 4,617,498 + Psyr_3876 0.71 -0.0 4,617,498 + Psyr_3876 0.71 +1.5 4,617,499 - Psyr_3876 0.71 +0.7 4,617,499 - Psyr_3876 0.71 +1.3 4,617,499 - Psyr_3876 0.71 +0.7 4,617,623 + Psyr_3876 0.88 +0.1 4,617,623 + Psyr_3876 0.88 -0.1 4,617,623 + Psyr_3876 0.88 +1.0 4,617,623 + Psyr_3876 0.88 -0.4 4,617,624 - Psyr_3876 0.88 +2.1 4,617,624 - Psyr_3876 0.88 -0.9 4,617,730 + -0.7 4,617,731 - +3.3 4,617,818 + +0.7 4,617,818 + +0.7 4,617,818 + +0.1 4,617,818 + +1.1 4,617,818 + -0.2 4,617,818 + -0.1 4,617,818 + -1.0 4,617,819 - +0.9 4,617,819 - +1.2 4,617,819 - +0.6 4,617,819 - +0.2 4,617,819 - -0.6 4,617,819 - +1.7 4,617,819 - +0.4 4,617,819 - -0.6 4,617,873 - Psyr_3877 0.14 -1.6 4,618,111 - Psyr_3877 0.35 -0.3 4,618,253 + Psyr_3877 0.48 +1.0 4,618,253 + Psyr_3877 0.48 +2.0 4,618,254 - Psyr_3877 0.48 +0.1 4,618,254 - Psyr_3877 0.48 -0.5 4,618,254 - Psyr_3877 0.48 +1.1 4,618,254 - Psyr_3877 0.48 -1.6 4,618,298 + Psyr_3877 0.52 +2.5 4,618,299 - Psyr_3877 0.52 +1.0 4,618,508 + Psyr_3877 0.71 +2.7 4,618,509 - Psyr_3877 0.71 -0.9 4,618,509 - Psyr_3877 0.71 +1.6
Or see this region's nucleotide sequence