Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3848

Experiment: KB with Methanol 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3847 and Psyr_3848 overlap by 4 nucleotidesPsyr_3848 and Psyr_3849 are separated by 0 nucleotidesPsyr_3849 and Psyr_3850 are separated by 256 nucleotides Psyr_3847: Psyr_3847 - L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein, at 4,585,993 to 4,587,258 _3847 Psyr_3848: Psyr_3848 - L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein, at 4,587,255 to 4,588,022 _3848 Psyr_3849: Psyr_3849 - L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein, at 4,588,023 to 4,588,724 _3849 Psyr_3850: Psyr_3850 - lipoprotein, putative, at 4,588,981 to 4,589,661 _3850 Position (kb) 4587 4588 4589Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4586.356 kb on + strand, within Psyr_3847at 4586.356 kb on + strand, within Psyr_3847at 4586.356 kb on + strand, within Psyr_3847at 4586.356 kb on + strand, within Psyr_3847at 4586.357 kb on - strand, within Psyr_3847at 4586.357 kb on - strand, within Psyr_3847at 4586.357 kb on - strandat 4586.357 kb on - strand, within Psyr_3847at 4586.357 kb on - strand, within Psyr_3847at 4586.357 kb on - strand, within Psyr_3847at 4586.419 kb on + strand, within Psyr_3847at 4586.419 kb on + strand, within Psyr_3847at 4586.420 kb on - strand, within Psyr_3847at 4586.452 kb on + strand, within Psyr_3847at 4586.452 kb on + strand, within Psyr_3847at 4586.452 kb on + strand, within Psyr_3847at 4586.452 kb on + strand, within Psyr_3847at 4586.453 kb on - strand, within Psyr_3847at 4586.453 kb on - strand, within Psyr_3847at 4586.470 kb on + strand, within Psyr_3847at 4586.471 kb on - strand, within Psyr_3847at 4586.471 kb on - strand, within Psyr_3847at 4586.471 kb on - strand, within Psyr_3847at 4586.471 kb on - strand, within Psyr_3847at 4586.471 kb on - strand, within Psyr_3847at 4586.572 kb on + strand, within Psyr_3847at 4586.572 kb on + strand, within Psyr_3847at 4586.572 kb on + strand, within Psyr_3847at 4586.573 kb on - strand, within Psyr_3847at 4586.755 kb on + strand, within Psyr_3847at 4586.756 kb on - strand, within Psyr_3847at 4586.756 kb on - strand, within Psyr_3847at 4586.973 kb on + strand, within Psyr_3847at 4586.973 kb on + strand, within Psyr_3847at 4586.974 kb on - strand, within Psyr_3847at 4587.269 kb on - strandat 4587.506 kb on + strand, within Psyr_3848at 4587.507 kb on - strand, within Psyr_3848at 4587.507 kb on - strand, within Psyr_3848at 4587.507 kb on - strand, within Psyr_3848at 4587.651 kb on + strand, within Psyr_3848at 4587.720 kb on + strand, within Psyr_3848at 4587.720 kb on + strand, within Psyr_3848at 4587.721 kb on - strand, within Psyr_3848at 4587.721 kb on - strand, within Psyr_3848at 4588.006 kb on - strandat 4588.020 kb on + strandat 4588.020 kb on + strandat 4588.021 kb on - strandat 4588.021 kb on - strandat 4588.021 kb on - strandat 4588.021 kb on - strandat 4588.021 kb on - strandat 4588.021 kb on - strandat 4588.054 kb on - strandat 4588.093 kb on + strandat 4588.093 kb on + strandat 4588.094 kb on - strand, within Psyr_3849at 4588.094 kb on - strand, within Psyr_3849at 4588.194 kb on - strand, within Psyr_3849at 4588.200 kb on + strand, within Psyr_3849at 4588.200 kb on + strand, within Psyr_3849at 4588.200 kb on + strand, within Psyr_3849at 4588.201 kb on - strand, within Psyr_3849at 4588.201 kb on - strand, within Psyr_3849at 4588.348 kb on - strand, within Psyr_3849at 4588.632 kb on + strand, within Psyr_3849at 4588.632 kb on + strand, within Psyr_3849at 4588.632 kb on + strand, within Psyr_3849at 4588.632 kb on + strand, within Psyr_3849at 4588.637 kb on - strand, within Psyr_3849at 4588.711 kb on - strandat 4588.817 kb on + strandat 4588.817 kb on + strandat 4588.818 kb on - strandat 4588.862 kb on + strandat 4588.863 kb on - strandat 4588.863 kb on - strandat 4589.007 kb on - strandat 4589.007 kb on - strandat 4589.007 kb on - strandat 4589.007 kb on - strandat 4589.018 kb on + strandat 4589.019 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
remove
4,586,356 + Psyr_3847 0.29 +0.3
4,586,356 + Psyr_3847 0.29 -0.0
4,586,356 + Psyr_3847 0.29 +0.3
4,586,356 + Psyr_3847 0.29 +0.2
4,586,357 - Psyr_3847 0.29 -0.9
4,586,357 - Psyr_3847 0.29 +1.3
4,586,357 - +2.9
4,586,357 - Psyr_3847 0.29 +1.0
4,586,357 - Psyr_3847 0.29 -1.7
4,586,357 - Psyr_3847 0.29 +0.7
4,586,419 + Psyr_3847 0.34 +0.1
4,586,419 + Psyr_3847 0.34 +0.5
4,586,420 - Psyr_3847 0.34 -0.7
4,586,452 + Psyr_3847 0.36 -2.1
4,586,452 + Psyr_3847 0.36 -1.3
4,586,452 + Psyr_3847 0.36 +1.6
4,586,452 + Psyr_3847 0.36 +0.1
4,586,453 - Psyr_3847 0.36 +1.4
4,586,453 - Psyr_3847 0.36 +0.1
4,586,470 + Psyr_3847 0.38 +0.1
4,586,471 - Psyr_3847 0.38 +0.1
4,586,471 - Psyr_3847 0.38 +0.3
4,586,471 - Psyr_3847 0.38 +0.0
4,586,471 - Psyr_3847 0.38 -1.1
4,586,471 - Psyr_3847 0.38 +0.4
4,586,572 + Psyr_3847 0.46 +0.4
4,586,572 + Psyr_3847 0.46 -0.1
4,586,572 + Psyr_3847 0.46 -0.6
4,586,573 - Psyr_3847 0.46 +0.2
4,586,755 + Psyr_3847 0.60 -1.3
4,586,756 - Psyr_3847 0.60 -0.9
4,586,756 - Psyr_3847 0.60 -0.7
4,586,973 + Psyr_3847 0.77 +1.5
4,586,973 + Psyr_3847 0.77 +0.9
4,586,974 - Psyr_3847 0.77 -1.3
4,587,269 - +0.8
4,587,506 + Psyr_3848 0.33 +0.5
4,587,507 - Psyr_3848 0.33 +0.5
4,587,507 - Psyr_3848 0.33 +1.2
4,587,507 - Psyr_3848 0.33 +0.3
4,587,651 + Psyr_3848 0.52 +1.4
4,587,720 + Psyr_3848 0.61 +0.7
4,587,720 + Psyr_3848 0.61 +0.2
4,587,721 - Psyr_3848 0.61 +1.9
4,587,721 - Psyr_3848 0.61 +0.7
4,588,006 - +2.2
4,588,020 + -0.4
4,588,020 + +0.1
4,588,021 - -0.5
4,588,021 - +1.2
4,588,021 - +1.0
4,588,021 - -0.9
4,588,021 - +1.4
4,588,021 - +0.9
4,588,054 - -1.0
4,588,093 + +1.8
4,588,093 + +0.5
4,588,094 - Psyr_3849 0.10 -3.2
4,588,094 - Psyr_3849 0.10 -1.3
4,588,194 - Psyr_3849 0.24 +0.2
4,588,200 + Psyr_3849 0.25 +0.6
4,588,200 + Psyr_3849 0.25 -0.4
4,588,200 + Psyr_3849 0.25 -2.5
4,588,201 - Psyr_3849 0.25 -1.0
4,588,201 - Psyr_3849 0.25 +1.3
4,588,348 - Psyr_3849 0.46 +0.0
4,588,632 + Psyr_3849 0.87 +1.1
4,588,632 + Psyr_3849 0.87 +0.3
4,588,632 + Psyr_3849 0.87 +0.8
4,588,632 + Psyr_3849 0.87 +0.5
4,588,637 - Psyr_3849 0.87 +0.7
4,588,711 - -3.8
4,588,817 + +0.4
4,588,817 + +1.0
4,588,818 - +1.9
4,588,862 + -0.7
4,588,863 - +0.8
4,588,863 - +0.6
4,589,007 - +0.5
4,589,007 - +1.1
4,589,007 - +0.3
4,589,007 - -1.4
4,589,018 + +1.0
4,589,019 - -1.6

Or see this region's nucleotide sequence