Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3788

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3787 and Psyr_3788 are separated by 144 nucleotidesPsyr_3788 and Psyr_3789 are separated by 69 nucleotides Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907 _3787 Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780 _3788 Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713 _3789 Position (kb) 4504 4505Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4503.276 kb on + strandat 4503.319 kb on + strandat 4503.320 kb on - strandat 4503.340 kb on + strandat 4503.341 kb on - strandat 4503.341 kb on - strandat 4503.341 kb on - strandat 4503.429 kb on - strand, within Psyr_3787at 4503.429 kb on - strand, within Psyr_3787at 4503.575 kb on + strand, within Psyr_3787at 4503.576 kb on - strand, within Psyr_3787at 4503.641 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.652 kb on - strand, within Psyr_3787at 4503.800 kb on + strand, within Psyr_3787at 4503.801 kb on - strand, within Psyr_3787at 4503.970 kb on + strandat 4503.971 kb on - strandat 4504.069 kb on - strandat 4504.069 kb on - strandat 4504.069 kb on - strandat 4504.262 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.365 kb on - strand, within Psyr_3788at 4504.365 kb on - strand, within Psyr_3788at 4504.392 kb on - strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.715 kb on + strandat 4504.716 kb on - strandat 4504.757 kb on - strandat 4504.811 kb on - strandat 4504.860 kb on + strandat 4505.064 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.137 kb on + strand, within Psyr_3789at 4505.282 kb on + strand, within Psyr_3789at 4505.282 kb on + strand, within Psyr_3789at 4505.283 kb on - strand, within Psyr_3789at 4505.283 kb on - strand, within Psyr_3789at 4505.283 kb on - strand, within Psyr_3789at 4505.329 kb on + strand, within Psyr_3789at 4505.444 kb on - strand, within Psyr_3789at 4505.711 kb on + strandat 4505.712 kb on - strandat 4505.712 kb on - strandat 4505.712 kb on - strandat 4505.737 kb on + strandat 4505.737 kb on + strandat 4505.738 kb on - strandat 4505.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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4,503,276 + -0.5
4,503,319 + +0.1
4,503,320 - +0.1
4,503,340 + +0.7
4,503,341 - +0.5
4,503,341 - +0.4
4,503,341 - +0.7
4,503,429 - Psyr_3787 0.16 +0.7
4,503,429 - Psyr_3787 0.16 -1.0
4,503,575 + Psyr_3787 0.41 -1.2
4,503,576 - Psyr_3787 0.41 -0.2
4,503,641 + Psyr_3787 0.53 -0.0
4,503,651 + Psyr_3787 0.55 +0.7
4,503,652 - Psyr_3787 0.55 -1.4
4,503,800 + Psyr_3787 0.81 +0.5
4,503,801 - Psyr_3787 0.81 -0.1
4,503,970 + -0.1
4,503,971 - -1.9
4,504,069 - +1.6
4,504,069 - -0.6
4,504,069 - -1.8
4,504,262 + Psyr_3788 0.29 +0.9
4,504,325 + Psyr_3788 0.37 -0.6
4,504,325 + Psyr_3788 0.37 -1.0
4,504,325 + Psyr_3788 0.37 -0.9
4,504,325 + Psyr_3788 0.37 +1.0
4,504,325 + Psyr_3788 0.37 -1.1
4,504,325 + Psyr_3788 0.37 +1.0
4,504,325 + Psyr_3788 0.37 +1.0
4,504,325 + Psyr_3788 0.37 -0.6
4,504,326 - Psyr_3788 0.38 +1.3
4,504,326 - Psyr_3788 0.38 +0.1
4,504,326 - Psyr_3788 0.38 -1.3
4,504,326 - Psyr_3788 0.38 -1.1
4,504,326 - Psyr_3788 0.38 +0.0
4,504,365 - Psyr_3788 0.43 +0.2
4,504,365 - Psyr_3788 0.43 -0.2
4,504,392 - Psyr_3788 0.47 -0.9
4,504,427 + Psyr_3788 0.51 -0.6
4,504,427 + Psyr_3788 0.51 -0.5
4,504,427 + Psyr_3788 0.51 -0.3
4,504,427 + Psyr_3788 0.51 -0.9
4,504,427 + Psyr_3788 0.51 -2.6
4,504,428 - Psyr_3788 0.52 +0.8
4,504,428 - Psyr_3788 0.52 -3.1
4,504,428 - Psyr_3788 0.52 +3.3
4,504,428 - Psyr_3788 0.52 -0.1
4,504,428 - Psyr_3788 0.52 +0.3
4,504,428 - Psyr_3788 0.52 -0.2
4,504,428 - Psyr_3788 0.52 -0.6
4,504,676 + Psyr_3788 0.86 -0.2
4,504,676 + Psyr_3788 0.86 -0.2
4,504,676 + Psyr_3788 0.86 +0.1
4,504,676 + Psyr_3788 0.86 -1.4
4,504,676 + Psyr_3788 0.86 -0.0
4,504,676 + Psyr_3788 0.86 -2.8
4,504,676 + Psyr_3788 0.86 -2.9
4,504,676 + Psyr_3788 0.86 -1.6
4,504,676 + Psyr_3788 0.86 -2.3
4,504,676 + Psyr_3788 0.86 +0.5
4,504,676 + Psyr_3788 0.86 -0.5
4,504,676 + Psyr_3788 0.86 -1.3
4,504,676 + Psyr_3788 0.86 +1.0
4,504,676 + Psyr_3788 0.86 -0.2
4,504,677 - Psyr_3788 0.86 +0.2
4,504,677 - Psyr_3788 0.86 +0.1
4,504,677 - Psyr_3788 0.86 -1.9
4,504,677 - Psyr_3788 0.86 -0.6
4,504,677 - Psyr_3788 0.86 -1.0
4,504,677 - Psyr_3788 0.86 -0.6
4,504,677 - Psyr_3788 0.86 -1.3
4,504,715 + -0.9
4,504,716 - -0.3
4,504,757 - -1.4
4,504,811 - -0.0
4,504,860 + +0.7
4,505,064 - Psyr_3789 0.25 -0.1
4,505,118 - Psyr_3789 0.31 +0.3
4,505,118 - Psyr_3789 0.31 +0.3
4,505,137 + Psyr_3789 0.33 +0.9
4,505,282 + Psyr_3789 0.50 -0.6
4,505,282 + Psyr_3789 0.50 +1.3
4,505,283 - Psyr_3789 0.50 +0.9
4,505,283 - Psyr_3789 0.50 -0.1
4,505,283 - Psyr_3789 0.50 +0.4
4,505,329 + Psyr_3789 0.55 -0.0
4,505,444 - Psyr_3789 0.69 +0.2
4,505,711 + +3.3
4,505,712 - -0.6
4,505,712 - +1.7
4,505,712 - +0.7
4,505,737 + +0.1
4,505,737 + -0.3
4,505,738 - +1.0
4,505,738 - -1.6

Or see this region's nucleotide sequence