Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3778 and Psyr_3779 are separated by 86 nucleotides Psyr_3779 and Psyr_3780 are separated by 24 nucleotides Psyr_3780 and Psyr_3781 are separated by 50 nucleotides
Psyr_3778: Psyr_3778 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,496,436 to 4,497,449
_3778
Psyr_3779: Psyr_3779 - GCN5-related N-acetyltransferase, at 4,497,536 to 4,497,982
_3779
Psyr_3780: Psyr_3780 - Formylmethionine deformylase, at 4,498,007 to 4,498,546
_3780
Psyr_3781: Psyr_3781 - Ribonuclease BN, at 4,498,597 to 4,499,562
_3781
Position (kb) 4497
4498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4496.770 kb on + strand, within Psyr_3778 at 4496.770 kb on + strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.996 kb on + strand, within Psyr_3778 at 4497.084 kb on + strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.251 kb on + strand, within Psyr_3778 at 4497.359 kb on + strand at 4497.360 kb on - strand at 4497.511 kb on + strand at 4497.511 kb on + strand at 4497.512 kb on - strand at 4497.512 kb on - strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.552 kb on - strand at 4497.632 kb on + strand, within Psyr_3779 at 4497.633 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4498.788 kb on + strand, within Psyr_3781 at 4498.790 kb on + strand, within Psyr_3781 at 4498.790 kb on + strand, within Psyr_3781 at 4498.790 kb on + strand, within Psyr_3781 at 4498.791 kb on - strand, within Psyr_3781 at 4498.791 kb on - strand, within Psyr_3781 at 4498.791 kb on - strand, within Psyr_3781 at 4498.791 kb on - strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.796 kb on + strand, within Psyr_3781 at 4498.797 kb on - strand, within Psyr_3781 at 4498.797 kb on - strand, within Psyr_3781 at 4498.797 kb on - strand, within Psyr_3781 at 4498.797 kb on - strand, within Psyr_3781 at 4498.833 kb on - strand, within Psyr_3781 at 4498.833 kb on - strand, within Psyr_3781 at 4498.844 kb on + strand, within Psyr_3781 at 4498.845 kb on - strand, within Psyr_3781 at 4498.845 kb on - strand, within Psyr_3781 at 4498.845 kb on - strand, within Psyr_3781 at 4498.866 kb on - strand, within Psyr_3781 at 4498.964 kb on + strand, within Psyr_3781 at 4498.964 kb on + strand, within Psyr_3781 at 4498.964 kb on + strand, within Psyr_3781 at 4498.964 kb on + strand, within Psyr_3781 at 4498.964 kb on + strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.965 kb on - strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.967 kb on + strand, within Psyr_3781 at 4498.968 kb on - strand, within Psyr_3781 at 4498.968 kb on - strand, within Psyr_3781 at 4498.968 kb on - strand, within Psyr_3781 at 4498.968 kb on - strand, within Psyr_3781
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 4,496,770 + Psyr_3778 0.33 -0.3 4,496,770 + Psyr_3778 0.33 +1.6 4,496,771 - Psyr_3778 0.33 +1.7 4,496,771 - Psyr_3778 0.33 -2.0 4,496,800 + Psyr_3778 0.36 -1.5 4,496,800 + Psyr_3778 0.36 +0.5 4,496,803 + Psyr_3778 0.36 +2.6 4,496,803 + Psyr_3778 0.36 -1.3 4,496,803 + Psyr_3778 0.36 +0.5 4,496,803 + Psyr_3778 0.36 +1.6 4,496,804 - Psyr_3778 0.36 +2.5 4,496,804 - Psyr_3778 0.36 -0.2 4,496,804 - Psyr_3778 0.36 +1.6 4,496,996 + Psyr_3778 0.55 -1.1 4,497,084 + Psyr_3778 0.64 -0.7 4,497,085 - Psyr_3778 0.64 -1.9 4,497,085 - Psyr_3778 0.64 -0.6 4,497,085 - Psyr_3778 0.64 +0.5 4,497,085 - Psyr_3778 0.64 -0.2 4,497,085 - Psyr_3778 0.64 +0.4 4,497,089 - Psyr_3778 0.64 +0.7 4,497,089 - Psyr_3778 0.64 -3.5 4,497,251 + Psyr_3778 0.80 +0.5 4,497,359 + +0.4 4,497,360 - -1.4 4,497,511 + -1.3 4,497,511 + -1.6 4,497,512 - -0.6 4,497,512 - -0.7 4,497,535 + -1.0 4,497,535 + -0.9 4,497,535 + -1.4 4,497,535 + -1.1 4,497,535 + -0.6 4,497,536 - -0.7 4,497,536 - +2.3 4,497,536 - -0.2 4,497,536 - -0.1 4,497,536 - -0.5 4,497,536 - +0.8 4,497,536 - +1.1 4,497,536 - +2.3 4,497,536 - -1.1 4,497,536 - +0.2 4,497,552 - -1.9 4,497,632 + Psyr_3779 0.21 +0.9 4,497,633 - Psyr_3779 0.22 +1.4 4,497,873 - Psyr_3779 0.75 +0.7 4,497,873 - Psyr_3779 0.75 +2.0 4,497,873 - Psyr_3779 0.75 +0.6 4,498,788 + Psyr_3781 0.20 +0.1 4,498,790 + Psyr_3781 0.20 +1.4 4,498,790 + Psyr_3781 0.20 -1.3 4,498,790 + Psyr_3781 0.20 +0.6 4,498,791 - Psyr_3781 0.20 -1.6 4,498,791 - Psyr_3781 0.20 -0.0 4,498,791 - Psyr_3781 0.20 -0.7 4,498,791 - Psyr_3781 0.20 +0.5 4,498,796 + Psyr_3781 0.21 -0.5 4,498,796 + Psyr_3781 0.21 -0.3 4,498,796 + Psyr_3781 0.21 +0.4 4,498,796 + Psyr_3781 0.21 -2.1 4,498,796 + Psyr_3781 0.21 -0.9 4,498,796 + Psyr_3781 0.21 -0.3 4,498,796 + Psyr_3781 0.21 +0.6 4,498,797 - Psyr_3781 0.21 +0.7 4,498,797 - Psyr_3781 0.21 +0.6 4,498,797 - Psyr_3781 0.21 +1.7 4,498,797 - Psyr_3781 0.21 -1.6 4,498,833 - Psyr_3781 0.24 +0.9 4,498,833 - Psyr_3781 0.24 +1.8 4,498,844 + Psyr_3781 0.26 -0.4 4,498,845 - Psyr_3781 0.26 -1.3 4,498,845 - Psyr_3781 0.26 -0.5 4,498,845 - Psyr_3781 0.26 -0.1 4,498,866 - Psyr_3781 0.28 +0.9 4,498,964 + Psyr_3781 0.38 +0.1 4,498,964 + Psyr_3781 0.38 -2.5 4,498,964 + Psyr_3781 0.38 -0.9 4,498,964 + Psyr_3781 0.38 -2.6 4,498,964 + Psyr_3781 0.38 +0.5 4,498,965 - Psyr_3781 0.38 -0.6 4,498,965 - Psyr_3781 0.38 -2.3 4,498,965 - Psyr_3781 0.38 +1.5 4,498,965 - Psyr_3781 0.38 -0.3 4,498,965 - Psyr_3781 0.38 -0.9 4,498,965 - Psyr_3781 0.38 +0.4 4,498,967 + Psyr_3781 0.38 +0.7 4,498,967 + Psyr_3781 0.38 +0.0 4,498,967 + Psyr_3781 0.38 -0.8 4,498,967 + Psyr_3781 0.38 +1.0 4,498,967 + Psyr_3781 0.38 -2.0 4,498,967 + Psyr_3781 0.38 -2.1 4,498,968 - Psyr_3781 0.38 -0.1 4,498,968 - Psyr_3781 0.38 +0.7 4,498,968 - Psyr_3781 0.38 -0.4 4,498,968 - Psyr_3781 0.38 +1.0
Or see this region's nucleotide sequence