Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3776 and Psyr_3777 are separated by 31 nucleotides Psyr_3777 and Psyr_3778 are separated by 131 nucleotides Psyr_3778 and Psyr_3779 are separated by 86 nucleotides Psyr_3779 and Psyr_3780 are separated by 24 nucleotides
Psyr_3776: Psyr_3776 - Cytosine deaminase, at 4,495,335 to 4,495,772
_3776
Psyr_3777: Psyr_3777 - conserved hypothetical protein, at 4,495,804 to 4,496,304
_3777
Psyr_3778: Psyr_3778 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,496,436 to 4,497,449
_3778
Psyr_3779: Psyr_3779 - GCN5-related N-acetyltransferase, at 4,497,536 to 4,497,982
_3779
Psyr_3780: Psyr_3780 - Formylmethionine deformylase, at 4,498,007 to 4,498,546
_3780
Position (kb) 4496
4497
4498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4495.556 kb on - strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.799 kb on - strand at 4495.799 kb on - strand at 4495.799 kb on - strand at 4495.885 kb on - strand, within Psyr_3777 at 4495.977 kb on + strand, within Psyr_3777 at 4495.991 kb on + strand, within Psyr_3777 at 4495.992 kb on - strand, within Psyr_3777 at 4495.992 kb on - strand, within Psyr_3777 at 4496.027 kb on + strand, within Psyr_3777 at 4496.048 kb on - strand, within Psyr_3777 at 4496.048 kb on - strand, within Psyr_3777 at 4496.136 kb on - strand, within Psyr_3777 at 4496.265 kb on + strand at 4496.340 kb on + strand at 4496.341 kb on - strand at 4496.397 kb on + strand at 4496.404 kb on + strand at 4496.404 kb on + strand at 4496.405 kb on - strand at 4496.405 kb on - strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.437 kb on + strand at 4496.770 kb on + strand, within Psyr_3778 at 4496.770 kb on + strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.996 kb on + strand, within Psyr_3778 at 4497.084 kb on + strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.251 kb on + strand, within Psyr_3778 at 4497.359 kb on + strand at 4497.360 kb on - strand at 4497.511 kb on + strand at 4497.511 kb on + strand at 4497.512 kb on - strand at 4497.512 kb on - strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.552 kb on - strand at 4497.632 kb on + strand, within Psyr_3779 at 4497.633 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 4,495,556 - Psyr_3776 0.50 +1.3 4,495,647 + Psyr_3776 0.71 -1.2 4,495,647 + Psyr_3776 0.71 +2.1 4,495,647 + Psyr_3776 0.71 -1.9 4,495,648 - Psyr_3776 0.71 -1.8 4,495,648 - Psyr_3776 0.71 +1.2 4,495,648 - Psyr_3776 0.71 -0.4 4,495,648 - Psyr_3776 0.71 +0.5 4,495,798 + +0.4 4,495,798 + +1.0 4,495,798 + -1.7 4,495,798 + +1.9 4,495,799 - -0.9 4,495,799 - +1.1 4,495,799 - -1.2 4,495,885 - Psyr_3777 0.16 +1.7 4,495,977 + Psyr_3777 0.35 +1.1 4,495,991 + Psyr_3777 0.37 +0.3 4,495,992 - Psyr_3777 0.38 +0.7 4,495,992 - Psyr_3777 0.38 +0.7 4,496,027 + Psyr_3777 0.45 +0.3 4,496,048 - Psyr_3777 0.49 -0.4 4,496,048 - Psyr_3777 0.49 +1.1 4,496,136 - Psyr_3777 0.66 +0.1 4,496,265 + +2.3 4,496,340 + +0.6 4,496,341 - -0.3 4,496,397 + -3.0 4,496,404 + -0.0 4,496,404 + +0.4 4,496,405 - -0.6 4,496,405 - +0.8 4,496,433 + -2.3 4,496,433 + -0.6 4,496,433 + -0.1 4,496,433 + -0.2 4,496,433 + +1.2 4,496,433 + -0.0 4,496,433 + +0.1 4,496,434 - +0.4 4,496,434 - +1.9 4,496,434 - +0.3 4,496,434 - +0.4 4,496,434 - -1.9 4,496,434 - -0.7 4,496,434 - +0.3 4,496,437 + +0.4 4,496,770 + Psyr_3778 0.33 -0.3 4,496,770 + Psyr_3778 0.33 +1.6 4,496,771 - Psyr_3778 0.33 +1.7 4,496,771 - Psyr_3778 0.33 -2.0 4,496,800 + Psyr_3778 0.36 -1.5 4,496,800 + Psyr_3778 0.36 +0.5 4,496,803 + Psyr_3778 0.36 +2.6 4,496,803 + Psyr_3778 0.36 -1.3 4,496,803 + Psyr_3778 0.36 +0.5 4,496,803 + Psyr_3778 0.36 +1.6 4,496,804 - Psyr_3778 0.36 +2.5 4,496,804 - Psyr_3778 0.36 -0.2 4,496,804 - Psyr_3778 0.36 +1.6 4,496,996 + Psyr_3778 0.55 -1.1 4,497,084 + Psyr_3778 0.64 -0.7 4,497,085 - Psyr_3778 0.64 -1.9 4,497,085 - Psyr_3778 0.64 -0.6 4,497,085 - Psyr_3778 0.64 +0.5 4,497,085 - Psyr_3778 0.64 -0.2 4,497,085 - Psyr_3778 0.64 +0.4 4,497,089 - Psyr_3778 0.64 +0.7 4,497,089 - Psyr_3778 0.64 -3.5 4,497,251 + Psyr_3778 0.80 +0.5 4,497,359 + +0.4 4,497,360 - -1.4 4,497,511 + -1.3 4,497,511 + -1.6 4,497,512 - -0.6 4,497,512 - -0.7 4,497,535 + -1.0 4,497,535 + -0.9 4,497,535 + -1.4 4,497,535 + -1.1 4,497,535 + -0.6 4,497,536 - -0.7 4,497,536 - +2.3 4,497,536 - -0.2 4,497,536 - -0.1 4,497,536 - -0.5 4,497,536 - +0.8 4,497,536 - +1.1 4,497,536 - +2.3 4,497,536 - -1.1 4,497,536 - +0.2 4,497,552 - -1.9 4,497,632 + Psyr_3779 0.21 +0.9 4,497,633 - Psyr_3779 0.22 +1.4 4,497,873 - Psyr_3779 0.75 +0.7 4,497,873 - Psyr_3779 0.75 +2.0 4,497,873 - Psyr_3779 0.75 +0.6
Or see this region's nucleotide sequence