Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3454

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3451 and Psyr_3452 overlap by 41 nucleotidesPsyr_3452 and Psyr_3453 are separated by 84 nucleotidesPsyr_3453 and Psyr_3454 are separated by 6 nucleotidesPsyr_3454 and Psyr_3455 overlap by 11 nucleotidesPsyr_3455 and Psyr_3456 are separated by 15 nucleotides Psyr_3451: Psyr_3451 - Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E, at 4,114,333 to 4,116,039 _3451 Psyr_3452: Psyr_3452 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,115,999 to 4,116,346 _3452 Psyr_3453: Psyr_3453 - flagellar protein FliJ, putative, at 4,116,431 to 4,116,880 _3453 Psyr_3454: Psyr_3454 - ATPase FliI/YscN, at 4,116,887 to 4,118,245 _3454 Psyr_3455: Psyr_3455 - Flagellar assembly protein FliH, at 4,118,235 to 4,119,053 _3455 Psyr_3456: Psyr_3456 - Flagellar motor switch protein FliG, at 4,119,069 to 4,120,085 _3456 Position (kb) 4116 4117 4118 4119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4116.044 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.296 kb on - strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.298 kb on + strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.388 kb on - strandat 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.624 kb on + strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4117.039 kb on - strand, within Psyr_3454at 4117.290 kb on + strand, within Psyr_3454at 4117.290 kb on + strand, within Psyr_3454at 4117.291 kb on - strand, within Psyr_3454at 4117.300 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.492 kb on - strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4118.202 kb on + strandat 4118.202 kb on + strandat 4118.202 kb on + strandat 4118.203 kb on - strandat 4118.203 kb on - strandat 4118.203 kb on - strandat 4118.414 kb on + strand, within Psyr_3455at 4118.415 kb on - strand, within Psyr_3455at 4118.565 kb on + strand, within Psyr_3455at 4118.566 kb on - strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.781 kb on + strand, within Psyr_3455at 4118.781 kb on + strand, within Psyr_3455at 4118.782 kb on - strand, within Psyr_3455at 4119.070 kb on + strandat 4119.070 kb on + strandat 4119.071 kb on - strandat 4119.103 kb on - strandat 4119.125 kb on + strandat 4119.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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4,116,044 + Psyr_3452 0.13 -0.5
4,116,219 + Psyr_3452 0.63 +0.3
4,116,219 + Psyr_3452 0.63 -1.1
4,116,219 + Psyr_3452 0.63 +2.6
4,116,219 + Psyr_3452 0.63 +0.2
4,116,219 + Psyr_3452 0.63 -1.7
4,116,220 - Psyr_3452 0.64 +1.2
4,116,220 - Psyr_3452 0.64 -1.0
4,116,220 - Psyr_3452 0.64 -0.3
4,116,220 - Psyr_3452 0.64 -0.2
4,116,220 - Psyr_3452 0.64 -0.4
4,116,247 - Psyr_3452 0.71 +0.2
4,116,247 - Psyr_3452 0.71 +1.2
4,116,247 - Psyr_3452 0.71 +0.3
4,116,247 - Psyr_3452 0.71 +0.8
4,116,296 - Psyr_3452 0.85 +0.6
4,116,297 + Psyr_3452 0.86 +1.6
4,116,297 + Psyr_3452 0.86 -0.2
4,116,298 + Psyr_3452 0.86 +0.4
4,116,298 - Psyr_3452 0.86 +0.4
4,116,298 - Psyr_3452 0.86 -0.7
4,116,298 - Psyr_3452 0.86 -1.7
4,116,298 - Psyr_3452 0.86 +0.6
4,116,298 - Psyr_3452 0.86 -0.5
4,116,298 - Psyr_3452 0.86 -1.3
4,116,298 - Psyr_3452 0.86 +0.8
4,116,298 - Psyr_3452 0.86 -2.0
4,116,298 - Psyr_3452 0.86 +1.4
4,116,388 - +0.5
4,116,522 + Psyr_3453 0.20 -0.9
4,116,522 + Psyr_3453 0.20 -0.4
4,116,522 + Psyr_3453 0.20 +1.3
4,116,522 + Psyr_3453 0.20 -0.7
4,116,522 + Psyr_3453 0.20 +0.2
4,116,522 + Psyr_3453 0.20 -0.5
4,116,523 - Psyr_3453 0.20 +0.3
4,116,523 - Psyr_3453 0.20 -2.9
4,116,523 - Psyr_3453 0.20 +0.4
4,116,624 + Psyr_3453 0.43 +0.4
4,116,625 - Psyr_3453 0.43 +0.6
4,116,625 - Psyr_3453 0.43 -0.2
4,117,039 - Psyr_3454 0.11 +1.0
4,117,290 + Psyr_3454 0.30 +0.9
4,117,290 + Psyr_3454 0.30 +0.0
4,117,291 - Psyr_3454 0.30 +0.2
4,117,300 + Psyr_3454 0.30 -0.2
4,117,303 + Psyr_3454 0.31 -0.1
4,117,303 + Psyr_3454 0.31 -0.6
4,117,303 + Psyr_3454 0.31 +0.3
4,117,303 + Psyr_3454 0.31 -0.2
4,117,303 + Psyr_3454 0.31 -0.0
4,117,303 + Psyr_3454 0.31 +0.9
4,117,304 - Psyr_3454 0.31 +0.2
4,117,304 - Psyr_3454 0.31 -0.6
4,117,492 - Psyr_3454 0.45 +1.4
4,117,512 + Psyr_3454 0.46 -0.8
4,117,512 + Psyr_3454 0.46 -0.6
4,117,512 + Psyr_3454 0.46 +0.2
4,117,512 + Psyr_3454 0.46 -1.9
4,117,513 - Psyr_3454 0.46 -0.0
4,117,513 - Psyr_3454 0.46 +1.1
4,117,513 - Psyr_3454 0.46 +0.3
4,117,513 - Psyr_3454 0.46 +0.9
4,117,513 - Psyr_3454 0.46 -0.8
4,117,513 - Psyr_3454 0.46 -0.0
4,117,513 - Psyr_3454 0.46 -0.0
4,117,513 - Psyr_3454 0.46 +1.5
4,117,513 - Psyr_3454 0.46 +0.1
4,118,202 + +0.2
4,118,202 + -0.5
4,118,202 + -1.6
4,118,203 - +0.5
4,118,203 - -0.1
4,118,203 - -0.5
4,118,414 + Psyr_3455 0.22 -0.8
4,118,415 - Psyr_3455 0.22 +0.5
4,118,565 + Psyr_3455 0.40 -0.5
4,118,566 - Psyr_3455 0.40 +0.1
4,118,659 + Psyr_3455 0.52 -0.8
4,118,659 + Psyr_3455 0.52 -0.9
4,118,659 + Psyr_3455 0.52 -0.3
4,118,660 - Psyr_3455 0.52 +0.2
4,118,660 - Psyr_3455 0.52 -3.8
4,118,660 - Psyr_3455 0.52 -0.2
4,118,781 + Psyr_3455 0.67 +0.1
4,118,781 + Psyr_3455 0.67 +0.4
4,118,782 - Psyr_3455 0.67 +0.1
4,119,070 + -1.5
4,119,070 + -1.4
4,119,071 - -0.9
4,119,103 - +0.4
4,119,125 + -0.5
4,119,126 - +0.7

Or see this region's nucleotide sequence