Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3338

Experiment: KB with Methanol 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Methanol 5 vol%
3,992,361	+				+0.3
3,992,362	-				+0.6
3,992,362	-				+1.2
3,992,362	-				+0.4
3,992,488	-				+0.2
3,992,514	+				+0.1
3,992,514	+				+0.4
3,992,515	-				-1.0
3,992,603	+				-1.0
3,992,603	+				+1.6
3,992,604	-				+0.6
3,992,604	-				-0.2
3,992,609	+				+0.3
3,992,610	-				-0.9
3,992,610	-				+0.3
3,992,868	+		Psyr_3337	0.53	+1.1
3,992,869	-		Psyr_3337	0.53	-2.0
3,992,912	-		Psyr_3337	0.61	-0.5
3,992,912	-		Psyr_3337	0.61	+0.8
3,993,308	+				-0.7
3,993,308	+				-0.2
3,993,308	+				-0.4
3,993,308	+				-0.3
3,993,309	-				+0.9
3,993,313	-				-2.7
3,993,313	-				-0.4
3,993,321	+				+0.6
3,993,333	-				-1.5
3,993,340	+				-0.5
3,993,341	-				+0.9
3,993,341	-				-1.1
3,993,568	-		Psyr_3338	0.16	+1.0
3,993,647	+		Psyr_3338	0.21	-0.9
3,993,831	-		Psyr_3338	0.35	-1.1
3,994,213	+		Psyr_3338	0.63	-0.6
3,994,213	+		Psyr_3338	0.63	+0.0
3,994,214	-		Psyr_3338	0.63	-1.6
3,994,352	+		Psyr_3338	0.73	-2.7
3,994,353	-		Psyr_3338	0.74	+0.1
3,994,353	-		Psyr_3338	0.74	+0.4
3,994,353	-		Psyr_3338	0.74	-1.1
3,994,484	+		Psyr_3338	0.83	-0.0
3,994,604	-				-2.0
3,994,708	+				+0.3
3,994,709	-				-1.1
3,994,801	+				+0.3
3,994,802	-				-1.6
3,994,846	+				+1.3
3,994,846	+				-0.4
3,994,847	-				-0.7
3,994,912	+				+0.0
3,994,920	+				-1.0
3,994,920	+				-1.7
3,994,920	+				+0.4
3,994,920	+				-2.3
3,994,920	+				+0.3
3,994,920	+				+0.7
3,994,920	+				+0.6
3,994,920	+				+0.6
3,994,920	+				+0.6
3,994,920	+				+1.5
3,994,920	+				+1.6
3,994,920	+				+0.4
3,994,920	+				-0.5
3,994,920	+				+0.1
3,994,921	-				+1.4
3,994,921	-				-0.4
3,994,921	-				-1.2
3,994,995	+				+1.1
3,995,003	-				-0.6
3,995,004	+				-0.2
3,995,004	+				-1.7
3,995,005	-				-0.8
3,995,005	-				+1.0
3,995,016	-				-0.5
3,995,019	+				+0.0
3,995,019	+				-1.3
3,995,112	+				-1.3
3,995,113	-				-1.7
3,995,113	-				-0.8
3,995,133	+				-1.1
3,995,234	+				-0.8
3,995,235	-				-1.7
3,995,242	+				+1.5
3,995,242	+				+0.0
3,995,270	-		Psyr_3339	0.19	+1.2
3,995,421	+				-1.2
3,995,421	+				-1.6
3,995,422	-				-1.5
3,995,422	-				-0.3
3,995,479	+				-2.7
3,995,559	+				-2.0
3,995,560	-				-0.9
3,995,560	-				-0.9
3,995,604	+				-0.5
3,995,605	-				+0.6
3,995,683	+		Psyr_3340	0.10	-0.8
3,995,683	+		Psyr_3340	0.10	+1.2
3,995,684	-		Psyr_3340	0.10	-0.2
3,995,684	-		Psyr_3340	0.10	-0.3