Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2965

Experiment: KB with Methanol 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2963 and Psyr_2964 are separated by 3 nucleotidesPsyr_2964 and Psyr_2965 overlap by 8 nucleotidesPsyr_2965 and Psyr_2966 are separated by 67 nucleotides Psyr_2963: Psyr_2963 - amino acid ABC transporter membrane protein 1, PAAT family, at 3,551,947 to 3,552,624 _2963 Psyr_2964: Psyr_2964 - amino acid ABC transporter membrane protein 2, PAAT family, at 3,552,628 to 3,553,278 _2964 Psyr_2965: Psyr_2965 - amino acid ABC transporter ATP-binding protein, PAAT family, at 3,553,271 to 3,554,068 _2965 Psyr_2966: Psyr_2966 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 3,554,136 to 3,556,064 _2966 Position (kb) 3553 3554 3555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3552.541 kb on + strand, within Psyr_2963at 3552.541 kb on + strand, within Psyr_2963at 3552.541 kb on + strand, within Psyr_2963at 3552.541 kb on + strand, within Psyr_2963at 3552.541 kb on + strand, within Psyr_2963at 3552.542 kb on - strand, within Psyr_2963at 3552.542 kb on - strand, within Psyr_2963at 3552.771 kb on - strand, within Psyr_2964at 3552.800 kb on - strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.841 kb on + strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.842 kb on - strand, within Psyr_2964at 3552.845 kb on + strand, within Psyr_2964at 3552.845 kb on + strand, within Psyr_2964at 3552.845 kb on + strand, within Psyr_2964at 3552.845 kb on + strand, within Psyr_2964at 3552.845 kb on + strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.846 kb on - strand, within Psyr_2964at 3552.877 kb on - strand, within Psyr_2964at 3552.920 kb on - strand, within Psyr_2964at 3552.920 kb on - strand, within Psyr_2964at 3552.931 kb on + strand, within Psyr_2964at 3552.931 kb on + strand, within Psyr_2964at 3552.932 kb on - strand, within Psyr_2964at 3552.932 kb on - strand, within Psyr_2964at 3553.125 kb on + strand, within Psyr_2964at 3553.126 kb on - strand, within Psyr_2964at 3553.174 kb on + strand, within Psyr_2964at 3553.174 kb on + strand, within Psyr_2964at 3553.175 kb on - strand, within Psyr_2964at 3553.175 kb on - strand, within Psyr_2964at 3553.192 kb on + strand, within Psyr_2964at 3553.193 kb on - strand, within Psyr_2964at 3553.252 kb on + strandat 3553.320 kb on + strandat 3553.320 kb on + strandat 3553.321 kb on - strandat 3553.321 kb on - strandat 3553.454 kb on - strand, within Psyr_2965at 3553.473 kb on - strand, within Psyr_2965at 3553.488 kb on + strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.489 kb on - strand, within Psyr_2965at 3553.694 kb on + strand, within Psyr_2965at 3553.770 kb on + strand, within Psyr_2965at 3553.771 kb on - strand, within Psyr_2965at 3553.908 kb on + strand, within Psyr_2965at 3553.908 kb on + strand, within Psyr_2965at 3553.908 kb on + strand, within Psyr_2965at 3553.908 kb on + strand, within Psyr_2965at 3553.909 kb on - strand, within Psyr_2965at 3553.909 kb on - strand, within Psyr_2965at 3553.909 kb on - strand, within Psyr_2965at 3554.250 kb on + strandat 3554.251 kb on - strandat 3554.504 kb on + strand, within Psyr_2966at 3554.505 kb on - strand, within Psyr_2966at 3554.505 kb on - strand, within Psyr_2966at 3554.889 kb on - strand, within Psyr_2966

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
remove
3,552,541 + Psyr_2963 0.88 +0.9
3,552,541 + Psyr_2963 0.88 +0.5
3,552,541 + Psyr_2963 0.88 +0.9
3,552,541 + Psyr_2963 0.88 +1.8
3,552,541 + Psyr_2963 0.88 +1.1
3,552,542 - Psyr_2963 0.88 -0.4
3,552,542 - Psyr_2963 0.88 +0.5
3,552,771 - Psyr_2964 0.22 +2.1
3,552,800 - Psyr_2964 0.26 +0.5
3,552,841 + Psyr_2964 0.33 +0.5
3,552,841 + Psyr_2964 0.33 -1.1
3,552,841 + Psyr_2964 0.33 -1.0
3,552,841 + Psyr_2964 0.33 +1.9
3,552,841 + Psyr_2964 0.33 +0.3
3,552,841 + Psyr_2964 0.33 +0.5
3,552,841 + Psyr_2964 0.33 +0.0
3,552,842 - Psyr_2964 0.33 +0.9
3,552,842 - Psyr_2964 0.33 -2.0
3,552,842 - Psyr_2964 0.33 -0.1
3,552,842 - Psyr_2964 0.33 +1.3
3,552,842 - Psyr_2964 0.33 -0.7
3,552,842 - Psyr_2964 0.33 +0.3
3,552,842 - Psyr_2964 0.33 -0.5
3,552,842 - Psyr_2964 0.33 -0.9
3,552,842 - Psyr_2964 0.33 -1.0
3,552,845 + Psyr_2964 0.33 -1.5
3,552,845 + Psyr_2964 0.33 -2.9
3,552,845 + Psyr_2964 0.33 -1.5
3,552,845 + Psyr_2964 0.33 -0.3
3,552,845 + Psyr_2964 0.33 -0.1
3,552,846 - Psyr_2964 0.33 +1.0
3,552,846 - Psyr_2964 0.33 +0.2
3,552,846 - Psyr_2964 0.33 +0.3
3,552,846 - Psyr_2964 0.33 +1.6
3,552,846 - Psyr_2964 0.33 -1.2
3,552,846 - Psyr_2964 0.33 -1.4
3,552,846 - Psyr_2964 0.33 +1.4
3,552,846 - Psyr_2964 0.33 +1.6
3,552,877 - Psyr_2964 0.38 +0.9
3,552,920 - Psyr_2964 0.45 -1.9
3,552,920 - Psyr_2964 0.45 +1.5
3,552,931 + Psyr_2964 0.47 +1.5
3,552,931 + Psyr_2964 0.47 +0.1
3,552,932 - Psyr_2964 0.47 +0.0
3,552,932 - Psyr_2964 0.47 -0.6
3,553,125 + Psyr_2964 0.76 -0.2
3,553,126 - Psyr_2964 0.76 +0.8
3,553,174 + Psyr_2964 0.84 -1.5
3,553,174 + Psyr_2964 0.84 -0.5
3,553,175 - Psyr_2964 0.84 +2.4
3,553,175 - Psyr_2964 0.84 -0.2
3,553,192 + Psyr_2964 0.87 -0.2
3,553,193 - Psyr_2964 0.87 -0.5
3,553,252 + +1.4
3,553,320 + -0.5
3,553,320 + -0.1
3,553,321 - +1.7
3,553,321 - +2.1
3,553,454 - Psyr_2965 0.23 +0.1
3,553,473 - Psyr_2965 0.25 -2.0
3,553,488 + Psyr_2965 0.27 +1.0
3,553,489 - Psyr_2965 0.27 -0.5
3,553,489 - Psyr_2965 0.27 -2.4
3,553,489 - Psyr_2965 0.27 +1.1
3,553,489 - Psyr_2965 0.27 -2.3
3,553,489 - Psyr_2965 0.27 -1.2
3,553,489 - Psyr_2965 0.27 -1.0
3,553,489 - Psyr_2965 0.27 -0.0
3,553,489 - Psyr_2965 0.27 -0.7
3,553,694 + Psyr_2965 0.53 +1.2
3,553,770 + Psyr_2965 0.63 +0.4
3,553,771 - Psyr_2965 0.63 -0.7
3,553,908 + Psyr_2965 0.80 +2.1
3,553,908 + Psyr_2965 0.80 +1.0
3,553,908 + Psyr_2965 0.80 +0.8
3,553,908 + Psyr_2965 0.80 +1.1
3,553,909 - Psyr_2965 0.80 -0.9
3,553,909 - Psyr_2965 0.80 +0.5
3,553,909 - Psyr_2965 0.80 +0.2
3,554,250 + -2.0
3,554,251 - +0.4
3,554,504 + Psyr_2966 0.19 -0.3
3,554,505 - Psyr_2966 0.19 -0.7
3,554,505 - Psyr_2966 0.19 -0.5
3,554,889 - Psyr_2966 0.39 -1.5

Or see this region's nucleotide sequence