Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2762

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2761 and Psyr_2762 overlap by 14 nucleotidesPsyr_2762 and Psyr_2763 are separated by 121 nucleotidesPsyr_2763 and Psyr_2764 are separated by 28 nucleotides Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002 _2761 Psyr_2762: Psyr_2762 - Peptidase S24, S26A and S26B, at 3,349,989 to 3,350,420 _2762 Psyr_2763: Psyr_2763 - Protein of unknown function DUF159, at 3,350,542 to 3,351,231 _2763 Psyr_2764: Psyr_2764 - conserved hypothetical protein, at 3,351,260 to 3,352,504 _2764 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3349.084 kb on - strand, within Psyr_2761at 3349.084 kb on - strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.352 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.596 kb on - strand, within Psyr_2761at 3349.598 kb on - strand, within Psyr_2761at 3349.693 kb on + strand, within Psyr_2761at 3349.694 kb on - strand, within Psyr_2761at 3349.694 kb on - strand, within Psyr_2761at 3349.695 kb on + strand, within Psyr_2761at 3349.696 kb on - strand, within Psyr_2761at 3349.759 kb on - strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.824 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.861 kb on - strand, within Psyr_2761at 3349.892 kb on - strandat 3349.902 kb on - strandat 3349.902 kb on - strandat 3349.902 kb on - strandat 3349.953 kb on + strandat 3350.018 kb on - strandat 3350.112 kb on - strand, within Psyr_2762at 3350.112 kb on - strand, within Psyr_2762at 3350.112 kb on - strand, within Psyr_2762at 3350.166 kb on - strand, within Psyr_2762at 3350.196 kb on + strand, within Psyr_2762at 3350.197 kb on - strand, within Psyr_2762at 3350.217 kb on - strand, within Psyr_2762at 3350.255 kb on + strand, within Psyr_2762at 3350.263 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.305 kb on - strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.353 kb on - strand, within Psyr_2762at 3350.407 kb on + strandat 3350.407 kb on + strandat 3350.408 kb on - strandat 3350.581 kb on + strandat 3350.581 kb on + strandat 3350.585 kb on + strandat 3350.585 kb on + strandat 3350.586 kb on - strandat 3350.647 kb on + strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3351.000 kb on + strand, within Psyr_2763at 3351.001 kb on - strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.123 kb on - strand, within Psyr_2763at 3351.138 kb on + strand, within Psyr_2763at 3351.139 kb on - strand, within Psyr_2763at 3351.163 kb on + strandat 3351.163 kb on + strandat 3351.164 kb on - strandat 3351.164 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.216 kb on - strandat 3351.230 kb on - strandat 3351.237 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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3,349,084 - Psyr_2761 0.28 +0.8
3,349,084 - Psyr_2761 0.28 +1.8
3,349,087 + Psyr_2761 0.28 +0.5
3,349,087 + Psyr_2761 0.28 +1.3
3,349,087 + Psyr_2761 0.28 -2.1
3,349,088 - Psyr_2761 0.29 -0.0
3,349,088 - Psyr_2761 0.29 +0.6
3,349,108 + Psyr_2761 0.30 -1.0
3,349,108 + Psyr_2761 0.30 +0.1
3,349,108 + Psyr_2761 0.30 -1.4
3,349,108 + Psyr_2761 0.30 -0.8
3,349,108 + Psyr_2761 0.30 +1.6
3,349,108 + Psyr_2761 0.30 +0.7
3,349,108 + Psyr_2761 0.30 +2.0
3,349,108 + Psyr_2761 0.30 +0.8
3,349,108 + Psyr_2761 0.30 +0.3
3,349,109 - Psyr_2761 0.30 -3.0
3,349,109 - Psyr_2761 0.30 +0.7
3,349,109 - Psyr_2761 0.30 +0.6
3,349,109 - Psyr_2761 0.30 +0.7
3,349,109 - Psyr_2761 0.30 -0.4
3,349,109 - Psyr_2761 0.30 +0.8
3,349,185 + Psyr_2761 0.36 +0.6
3,349,185 + Psyr_2761 0.36 -0.0
3,349,186 - Psyr_2761 0.36 +1.7
3,349,186 - Psyr_2761 0.36 +1.1
3,349,352 + Psyr_2761 0.49 -1.8
3,349,409 + Psyr_2761 0.54 -3.0
3,349,409 + Psyr_2761 0.54 -3.1
3,349,409 + Psyr_2761 0.54 -0.5
3,349,409 + Psyr_2761 0.54 -0.3
3,349,410 - Psyr_2761 0.54 +0.3
3,349,410 - Psyr_2761 0.54 -1.7
3,349,410 - Psyr_2761 0.54 -0.7
3,349,459 + Psyr_2761 0.58 -0.4
3,349,459 + Psyr_2761 0.58 -2.4
3,349,459 + Psyr_2761 0.58 +0.6
3,349,460 - Psyr_2761 0.58 +0.2
3,349,460 - Psyr_2761 0.58 -1.7
3,349,460 - Psyr_2761 0.58 +0.3
3,349,460 - Psyr_2761 0.58 +0.1
3,349,595 + Psyr_2761 0.68 +0.2
3,349,595 + Psyr_2761 0.68 +1.1
3,349,596 - Psyr_2761 0.68 -0.9
3,349,598 - Psyr_2761 0.68 +2.3
3,349,693 + Psyr_2761 0.76 -0.2
3,349,694 - Psyr_2761 0.76 +1.2
3,349,694 - Psyr_2761 0.76 -2.1
3,349,695 + Psyr_2761 0.76 -1.3
3,349,696 - Psyr_2761 0.76 -0.1
3,349,759 - Psyr_2761 0.81 +1.3
3,349,767 + Psyr_2761 0.82 +0.6
3,349,767 + Psyr_2761 0.82 -3.6
3,349,767 + Psyr_2761 0.82 -1.9
3,349,768 - Psyr_2761 0.82 +0.6
3,349,768 - Psyr_2761 0.82 +0.9
3,349,768 - Psyr_2761 0.82 +0.2
3,349,824 + Psyr_2761 0.86 -2.5
3,349,860 + Psyr_2761 0.89 +0.2
3,349,860 + Psyr_2761 0.89 +1.5
3,349,860 + Psyr_2761 0.89 -1.1
3,349,861 - Psyr_2761 0.89 -2.0
3,349,892 - -0.0
3,349,902 - +1.0
3,349,902 - +0.2
3,349,902 - -0.7
3,349,953 + +1.1
3,350,018 - +1.6
3,350,112 - Psyr_2762 0.28 -1.0
3,350,112 - Psyr_2762 0.28 +1.0
3,350,112 - Psyr_2762 0.28 -0.7
3,350,166 - Psyr_2762 0.41 +1.0
3,350,196 + Psyr_2762 0.48 +0.3
3,350,197 - Psyr_2762 0.48 +0.6
3,350,217 - Psyr_2762 0.53 +0.9
3,350,255 + Psyr_2762 0.62 +0.6
3,350,263 + Psyr_2762 0.63 +0.0
3,350,304 + Psyr_2762 0.73 +0.1
3,350,304 + Psyr_2762 0.73 -1.8
3,350,304 + Psyr_2762 0.73 +0.3
3,350,305 - Psyr_2762 0.73 -0.3
3,350,306 + Psyr_2762 0.73 -0.0
3,350,306 + Psyr_2762 0.73 +0.2
3,350,306 + Psyr_2762 0.73 +1.2
3,350,306 + Psyr_2762 0.73 +1.6
3,350,306 + Psyr_2762 0.73 -1.1
3,350,306 + Psyr_2762 0.73 -1.8
3,350,306 + Psyr_2762 0.73 +1.0
3,350,306 + Psyr_2762 0.73 +0.8
3,350,306 + Psyr_2762 0.73 -0.3
3,350,306 + Psyr_2762 0.73 +2.3
3,350,306 + Psyr_2762 0.73 +0.5
3,350,306 + Psyr_2762 0.73 -1.0
3,350,306 + Psyr_2762 0.73 +0.2
3,350,306 + Psyr_2762 0.73 +0.0
3,350,307 - Psyr_2762 0.74 +0.9
3,350,307 - Psyr_2762 0.74 -0.4
3,350,307 - Psyr_2762 0.74 -0.9
3,350,307 - Psyr_2762 0.74 -0.2
3,350,307 - Psyr_2762 0.74 -0.6
3,350,307 - Psyr_2762 0.74 +0.8
3,350,307 - Psyr_2762 0.74 +2.1
3,350,307 - Psyr_2762 0.74 -1.8
3,350,307 - Psyr_2762 0.74 +0.9
3,350,307 - Psyr_2762 0.74 +0.3
3,350,307 - Psyr_2762 0.74 +0.3
3,350,307 - Psyr_2762 0.74 +1.1
3,350,307 - Psyr_2762 0.74 +2.2
3,350,307 - Psyr_2762 0.74 -1.9
3,350,307 - Psyr_2762 0.74 -1.4
3,350,307 - Psyr_2762 0.74 -0.4
3,350,307 - Psyr_2762 0.74 +2.0
3,350,353 - Psyr_2762 0.84 +2.0
3,350,407 + +0.2
3,350,407 + -0.0
3,350,408 - -0.6
3,350,581 + +0.6
3,350,581 + +0.3
3,350,585 + -0.1
3,350,585 + +1.2
3,350,586 - -0.8
3,350,647 + Psyr_2763 0.15 -1.4
3,350,648 - Psyr_2763 0.15 +0.9
3,350,648 - Psyr_2763 0.15 +0.2
3,350,648 - Psyr_2763 0.15 +0.6
3,350,902 + Psyr_2763 0.52 +1.8
3,350,902 + Psyr_2763 0.52 -0.2
3,350,902 + Psyr_2763 0.52 +1.1
3,350,902 + Psyr_2763 0.52 +1.5
3,350,902 + Psyr_2763 0.52 -1.8
3,350,903 - Psyr_2763 0.52 -1.5
3,350,903 - Psyr_2763 0.52 -3.0
3,350,903 - Psyr_2763 0.52 -0.6
3,351,000 + Psyr_2763 0.66 -0.1
3,351,001 - Psyr_2763 0.67 -1.1
3,351,035 + Psyr_2763 0.71 -1.3
3,351,035 + Psyr_2763 0.71 +1.2
3,351,035 + Psyr_2763 0.71 +0.1
3,351,035 + Psyr_2763 0.71 +1.1
3,351,036 - Psyr_2763 0.72 +1.2
3,351,036 - Psyr_2763 0.72 -1.0
3,351,122 + Psyr_2763 0.84 +0.6
3,351,122 + Psyr_2763 0.84 -0.4
3,351,123 - Psyr_2763 0.84 +1.6
3,351,138 + Psyr_2763 0.86 -0.9
3,351,139 - Psyr_2763 0.87 +0.6
3,351,163 + +0.3
3,351,163 + -1.0
3,351,164 - -1.7
3,351,164 - +0.9
3,351,166 - +2.1
3,351,166 - +0.6
3,351,166 - +0.4
3,351,166 - +1.0
3,351,216 - +1.1
3,351,230 - +0.6
3,351,237 + -0.2
3,351,327 + -0.1
3,351,327 + -1.0
3,351,327 + -0.2
3,351,329 + +0.0
3,351,329 + -1.3
3,351,329 + +0.4
3,351,330 - -0.9

Or see this region's nucleotide sequence