Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2655

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2653 and Psyr_2654 are separated by 29 nucleotidesPsyr_2654 and Psyr_2655 are separated by 131 nucleotidesPsyr_2655 and Psyr_2656 are separated by 171 nucleotidesPsyr_2656 and Psyr_2657 are separated by 143 nucleotides Psyr_2653: Psyr_2653 - ISPsy8, transposase OrfA, at 3,224,311 to 3,224,826 _2653 Psyr_2654: Psyr_2654 - Integrase, catalytic region, at 3,224,856 to 3,225,662 _2654 Psyr_2655: Psyr_2655 - Nitroreductase, at 3,225,794 to 3,226,615 _2655 Psyr_2656: Psyr_2656 - hypothetical protein, at 3,226,787 to 3,227,137 _2656 Psyr_2657: Psyr_2657 - hypothetical protein, at 3,227,281 to 3,228,120 _2657 Position (kb) 3225 3226 3227Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.718 kb on + strandat 3225.719 kb on - strandat 3225.719 kb on - strandat 3225.719 kb on - strandat 3225.719 kb on - strandat 3225.719 kb on - strandat 3225.719 kb on - strandat 3225.745 kb on + strandat 3225.746 kb on - strandat 3225.778 kb on + strandat 3225.778 kb on + strandat 3225.779 kb on - strandat 3226.067 kb on + strand, within Psyr_2655at 3226.067 kb on + strand, within Psyr_2655at 3226.067 kb on + strand, within Psyr_2655at 3226.068 kb on - strand, within Psyr_2655at 3226.096 kb on - strand, within Psyr_2655at 3226.096 kb on - strand, within Psyr_2655at 3226.096 kb on - strand, within Psyr_2655at 3226.114 kb on + strand, within Psyr_2655at 3226.147 kb on - strand, within Psyr_2655at 3226.147 kb on - strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.166 kb on + strand, within Psyr_2655at 3226.167 kb on - strand, within Psyr_2655at 3226.259 kb on + strand, within Psyr_2655at 3226.259 kb on + strand, within Psyr_2655at 3226.259 kb on + strand, within Psyr_2655at 3226.259 kb on + strand, within Psyr_2655at 3226.259 kb on + strand, within Psyr_2655at 3226.260 kb on - strand, within Psyr_2655at 3226.347 kb on + strand, within Psyr_2655at 3226.425 kb on - strand, within Psyr_2655at 3226.459 kb on - strand, within Psyr_2655at 3226.459 kb on - strand, within Psyr_2655at 3226.460 kb on + strand, within Psyr_2655at 3226.460 kb on + strand, within Psyr_2655at 3226.460 kb on + strand, within Psyr_2655at 3226.460 kb on + strand, within Psyr_2655at 3226.461 kb on - strand, within Psyr_2655at 3226.461 kb on - strand, within Psyr_2655at 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.701 kb on + strandat 3226.702 kb on - strandat 3226.702 kb on - strandat 3226.702 kb on - strandat 3226.702 kb on - strandat 3226.702 kb on - strandat 3226.727 kb on - strandat 3226.727 kb on - strandat 3226.757 kb on + strandat 3226.758 kb on - strandat 3226.758 kb on - strandat 3226.768 kb on - strandat 3226.771 kb on + strandat 3226.771 kb on + strandat 3226.771 kb on + strandat 3226.772 kb on - strandat 3226.772 kb on - strandat 3226.772 kb on - strandat 3226.772 kb on - strandat 3226.772 kb on - strandat 3226.772 kb on - strandat 3226.788 kb on + strandat 3226.789 kb on - strandat 3226.841 kb on - strand, within Psyr_2656at 3226.841 kb on - strand, within Psyr_2656at 3226.863 kb on + strand, within Psyr_2656at 3226.938 kb on + strand, within Psyr_2656at 3226.938 kb on + strand, within Psyr_2656at 3226.939 kb on - strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.942 kb on + strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.943 kb on - strand, within Psyr_2656at 3226.946 kb on + strand, within Psyr_2656at 3226.946 kb on + strand, within Psyr_2656at 3226.946 kb on + strand, within Psyr_2656at 3226.946 kb on + strand, within Psyr_2656at 3226.947 kb on - strand, within Psyr_2656at 3226.947 kb on - strand, within Psyr_2656at 3227.060 kb on + strand, within Psyr_2656at 3227.061 kb on - strand, within Psyr_2656at 3227.061 kb on - strand, within Psyr_2656at 3227.149 kb on + strandat 3227.149 kb on + strandat 3227.149 kb on + strandat 3227.149 kb on + strandat 3227.149 kb on + strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.150 kb on - strandat 3227.204 kb on + strandat 3227.204 kb on + strandat 3227.205 kb on - strandat 3227.205 kb on - strandat 3227.205 kb on - strandat 3227.306 kb on - strandat 3227.306 kb on - strandat 3227.306 kb on - strandat 3227.377 kb on + strand, within Psyr_2657at 3227.377 kb on + strandat 3227.378 kb on - strand, within Psyr_2657at 3227.378 kb on - strand, within Psyr_2657at 3227.378 kb on - strand, within Psyr_2657at 3227.378 kb on - strand, within Psyr_2657at 3227.378 kb on - strand, within Psyr_2657at 3227.378 kb on - strand, within Psyr_2657at 3227.421 kb on - strand, within Psyr_2657at 3227.451 kb on + strand, within Psyr_2657at 3227.452 kb on - strand, within Psyr_2657at 3227.503 kb on + strand, within Psyr_2657at 3227.504 kb on - strand, within Psyr_2657

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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3,225,718 + -0.3
3,225,718 + +0.5
3,225,718 + -1.7
3,225,718 + +0.4
3,225,718 + -0.5
3,225,718 + -0.9
3,225,718 + +0.5
3,225,718 + -0.2
3,225,718 + +1.1
3,225,719 - -1.0
3,225,719 - +0.1
3,225,719 - +1.8
3,225,719 - +1.0
3,225,719 - +2.0
3,225,719 - +0.1
3,225,745 + -0.3
3,225,746 - -0.2
3,225,778 + +0.1
3,225,778 + -2.5
3,225,779 - -0.9
3,226,067 + Psyr_2655 0.33 +0.2
3,226,067 + Psyr_2655 0.33 +1.6
3,226,067 + Psyr_2655 0.33 -0.7
3,226,068 - Psyr_2655 0.33 -1.8
3,226,096 - Psyr_2655 0.37 +1.1
3,226,096 - Psyr_2655 0.37 +0.1
3,226,096 - Psyr_2655 0.37 +2.4
3,226,114 + Psyr_2655 0.39 +0.0
3,226,147 - Psyr_2655 0.43 -0.8
3,226,147 - Psyr_2655 0.43 -0.5
3,226,166 + Psyr_2655 0.45 +0.9
3,226,166 + Psyr_2655 0.45 +2.2
3,226,166 + Psyr_2655 0.45 +1.7
3,226,166 + Psyr_2655 0.45 -0.4
3,226,166 + Psyr_2655 0.45 -0.7
3,226,166 + Psyr_2655 0.45 +0.2
3,226,166 + Psyr_2655 0.45 +0.5
3,226,166 + Psyr_2655 0.45 +0.1
3,226,167 - Psyr_2655 0.45 -0.3
3,226,259 + Psyr_2655 0.57 +0.6
3,226,259 + Psyr_2655 0.57 -4.0
3,226,259 + Psyr_2655 0.57 -0.3
3,226,259 + Psyr_2655 0.57 +0.9
3,226,259 + Psyr_2655 0.57 +0.5
3,226,260 - Psyr_2655 0.57 +0.7
3,226,347 + Psyr_2655 0.67 -1.0
3,226,425 - Psyr_2655 0.77 +0.7
3,226,459 - Psyr_2655 0.81 +2.0
3,226,459 - Psyr_2655 0.81 +0.1
3,226,460 + Psyr_2655 0.81 +0.7
3,226,460 + Psyr_2655 0.81 +1.2
3,226,460 + Psyr_2655 0.81 -0.0
3,226,460 + Psyr_2655 0.81 +0.1
3,226,461 - Psyr_2655 0.81 +0.5
3,226,461 - Psyr_2655 0.81 +0.4
3,226,701 + -0.4
3,226,701 + +0.9
3,226,701 + -1.9
3,226,701 + -0.2
3,226,701 + +0.8
3,226,701 + +0.4
3,226,701 + -1.5
3,226,701 + +1.5
3,226,702 - +0.4
3,226,702 - -0.3
3,226,702 - -0.2
3,226,702 - +1.1
3,226,702 - -1.2
3,226,727 - -2.8
3,226,727 - -1.6
3,226,757 + +0.5
3,226,758 - -0.6
3,226,758 - +1.0
3,226,768 - -0.7
3,226,771 + +0.5
3,226,771 + +0.2
3,226,771 + +1.8
3,226,772 - -2.3
3,226,772 - +0.7
3,226,772 - -1.8
3,226,772 - +1.1
3,226,772 - -0.3
3,226,772 - -1.7
3,226,788 + +1.1
3,226,789 - +0.1
3,226,841 - Psyr_2656 0.15 +1.5
3,226,841 - Psyr_2656 0.15 -0.5
3,226,863 + Psyr_2656 0.22 +0.5
3,226,938 + Psyr_2656 0.43 +0.5
3,226,938 + Psyr_2656 0.43 -2.0
3,226,939 - Psyr_2656 0.43 -2.9
3,226,942 + Psyr_2656 0.44 -1.8
3,226,942 + Psyr_2656 0.44 -0.5
3,226,942 + Psyr_2656 0.44 -1.0
3,226,942 + Psyr_2656 0.44 +1.9
3,226,942 + Psyr_2656 0.44 +0.2
3,226,942 + Psyr_2656 0.44 +0.7
3,226,943 - Psyr_2656 0.44 +0.8
3,226,943 - Psyr_2656 0.44 +2.5
3,226,943 - Psyr_2656 0.44 +0.2
3,226,943 - Psyr_2656 0.44 -1.1
3,226,943 - Psyr_2656 0.44 +1.3
3,226,943 - Psyr_2656 0.44 -2.6
3,226,946 + Psyr_2656 0.45 -0.4
3,226,946 + Psyr_2656 0.45 +0.7
3,226,946 + Psyr_2656 0.45 +1.3
3,226,946 + Psyr_2656 0.45 -1.2
3,226,947 - Psyr_2656 0.46 +0.5
3,226,947 - Psyr_2656 0.46 -0.6
3,227,060 + Psyr_2656 0.78 -0.5
3,227,061 - Psyr_2656 0.78 -2.0
3,227,061 - Psyr_2656 0.78 +0.4
3,227,149 + -0.3
3,227,149 + +1.0
3,227,149 + -0.5
3,227,149 + +0.1
3,227,149 + +0.9
3,227,150 - +1.1
3,227,150 - -1.0
3,227,150 - +1.4
3,227,150 - +0.7
3,227,150 - -1.2
3,227,150 - +0.3
3,227,150 - -0.5
3,227,204 + +0.1
3,227,204 + +2.3
3,227,205 - +0.5
3,227,205 - -0.7
3,227,205 - +0.6
3,227,306 - -0.2
3,227,306 - +0.7
3,227,306 - -1.9
3,227,377 + Psyr_2657 0.11 -0.2
3,227,377 + -1.0
3,227,378 - Psyr_2657 0.12 -1.7
3,227,378 - Psyr_2657 0.12 +1.5
3,227,378 - Psyr_2657 0.12 -1.3
3,227,378 - Psyr_2657 0.12 +0.0
3,227,378 - Psyr_2657 0.12 +0.2
3,227,378 - Psyr_2657 0.12 -0.7
3,227,421 - Psyr_2657 0.17 +1.0
3,227,451 + Psyr_2657 0.20 +1.2
3,227,452 - Psyr_2657 0.20 +1.1
3,227,503 + Psyr_2657 0.26 -0.1
3,227,504 - Psyr_2657 0.27 -0.8

Or see this region's nucleotide sequence