Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2579

Experiment: KB with Methanol 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Methanol 5 vol%
3,019,129	+				-1.0
3,019,129	+				-0.4
3,019,130	-				+0.1
3,019,130	-				-0.0
3,019,130	-				+0.9
3,019,130	-				-0.0
3,019,130	-				+0.8
3,019,130	-				-0.0
3,019,130	-				+2.7
3,019,130	-				-0.2
3,019,355	+		Psyr_2578	0.38	+0.4
3,019,356	-		Psyr_2578	0.38	+2.3
3,019,489	-		Psyr_2578	0.58	-1.4
3,019,495	-		Psyr_2578	0.59	-0.9
3,019,500	-		Psyr_2578	0.59	-0.9
3,019,749	+				+0.2
3,019,750	-				-1.0
3,019,765	+				-0.2
3,019,765	+				+1.6
3,019,765	+				+0.3
3,019,766	-				-2.2
3,019,766	-				-2.7
3,019,766	-				-1.0
3,019,766	-				-1.4
3,019,801	+				+0.3
3,019,811	-				+0.0
3,019,811	-				+0.3
3,019,867	+				+0.6
3,019,868	-				+0.6
3,019,927	+				+1.0
3,019,927	+				-2.2
3,019,927	+				-0.3
3,019,928	-				+0.6
3,019,931	+				-0.3
3,019,931	+				+1.7
3,019,931	+				+1.6
3,020,044	+				+1.3
3,020,045	-				-0.7
3,020,659	-		Psyr_2579	0.38	+0.6
3,020,659	-		Psyr_2579	0.38	-0.7
3,020,659	-		Psyr_2579	0.38	+1.6
3,020,765	+		Psyr_2579	0.45	+0.7
3,020,765	+		Psyr_2579	0.45	+0.5
3,020,765	+		Psyr_2579	0.45	-0.7
3,020,766	-		Psyr_2579	0.45	-1.9
3,020,766	-		Psyr_2579	0.45	-0.7
3,020,777	-		Psyr_2579	0.46	-1.4
3,020,777	-		Psyr_2579	0.46	-1.4
3,021,016	+		Psyr_2579	0.62	+0.1
3,021,016	+		Psyr_2579	0.62	-0.7
3,021,016	+		Psyr_2579	0.62	-0.8
3,021,022	+		Psyr_2579	0.63	-0.5
3,021,022	+		Psyr_2579	0.63	+2.3
3,021,134	-		Psyr_2579	0.71	+2.0
3,021,206	+		Psyr_2579	0.76	+0.8
3,021,525	+				+0.7
3,021,587	-				-1.7
3,021,775	+				+1.1
3,022,190	-		Psyr_2580	0.37	-0.3
3,022,221	+		Psyr_2580	0.43	+1.0
3,022,414	+		Psyr_2580	0.81	+1.2
3,022,465	+				+0.9
3,022,465	+				+0.2
3,022,465	+				+0.4
3,022,466	-				-1.4
3,022,466	-				-1.4
3,022,466	-				+1.3
3,022,467	+				+0.5
3,022,481	-				+0.1
3,022,547	-				-2.4