Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2504

Experiment: KB with Methanol 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Methanol 5 vol%
2,913,029	+				-2.2
2,913,103	+				-2.9
2,913,103	+				+0.1
2,913,165	+		Psyr_2503	0.15	+2.9
2,913,316	+		Psyr_2503	0.33	-0.4
2,913,316	+		Psyr_2503	0.33	+0.1
2,913,317	-		Psyr_2503	0.33	+2.4
2,913,317	-		Psyr_2503	0.33	+1.9
2,913,410	+		Psyr_2503	0.44	+1.0
2,913,410	+		Psyr_2503	0.44	+0.4
2,913,449	-		Psyr_2503	0.49	-1.9
2,913,455	+		Psyr_2503	0.49	-1.4
2,913,455	+		Psyr_2503	0.49	-1.2
2,913,456	-		Psyr_2503	0.49	-1.7
2,913,456	-		Psyr_2503	0.49	+1.6
2,913,521	+		Psyr_2503	0.57	+0.3
2,913,521	+		Psyr_2503	0.57	-1.7
2,913,522	-		Psyr_2503	0.57	+0.0
2,913,593	+		Psyr_2503	0.65	+1.4
2,913,594	-		Psyr_2503	0.66	+0.5
2,913,594	-		Psyr_2503	0.66	-0.4
2,913,594	-		Psyr_2503	0.66	+0.3
2,913,594	-		Psyr_2503	0.66	-0.9
2,913,653	+		Psyr_2503	0.73	-0.0
2,913,654	-		Psyr_2503	0.73	-2.9
2,913,716	+		Psyr_2503	0.80	-1.2
2,913,716	+		Psyr_2503	0.80	-0.2
2,913,810	-				+0.2
2,913,878	+				+0.0
2,913,878	+				-0.2
2,913,879	-				+0.9
2,913,879	-				+1.7
2,913,879	-				+1.9
2,913,885	-				+0.4
2,913,885	-				-0.5
2,913,885	-				+0.4
2,914,098	-		Psyr_2504	0.22	-1.4
2,914,098	-		Psyr_2504	0.22	+2.0
2,914,178	+		Psyr_2504	0.34	-1.4
2,914,178	+		Psyr_2504	0.34	+1.3
2,914,178	+		Psyr_2504	0.34	-0.4
2,914,178	+		Psyr_2504	0.34	-0.9
2,914,178	+		Psyr_2504	0.34	-2.0
2,914,178	+		Psyr_2504	0.34	-1.0
2,914,247	+		Psyr_2504	0.45	-1.0
2,914,259	+		Psyr_2504	0.47	-0.3
2,914,358	+		Psyr_2504	0.62	+0.1
2,914,358	+		Psyr_2504	0.62	+0.5
2,914,359	-		Psyr_2504	0.62	-0.5
2,914,359	-		Psyr_2504	0.62	+2.2
2,914,359	-		Psyr_2504	0.62	+0.1
2,914,361	-		Psyr_2504	0.62	+0.3
2,914,389	+		Psyr_2504	0.66	+1.2
2,914,389	+		Psyr_2504	0.66	-0.3
2,914,389	+		Psyr_2504	0.66	-0.6
2,914,390	-		Psyr_2504	0.66	+0.9
2,914,390	-		Psyr_2504	0.66	-0.5
2,914,390	-		Psyr_2504	0.66	-0.4
2,914,472	+		Psyr_2504	0.79	-0.4
2,914,472	+		Psyr_2504	0.79	-2.6
2,914,472	+		Psyr_2504	0.79	+1.4
2,914,473	+		Psyr_2504	0.79	-0.6
2,914,473	-		Psyr_2504	0.79	-0.0
2,914,473	-		Psyr_2504	0.79	+0.8
2,914,473	-		Psyr_2504	0.79	+0.6
2,914,473	-		Psyr_2504	0.79	-0.7
2,914,541	+		Psyr_2504	0.89	-0.7
2,914,541	+		Psyr_2504	0.89	+0.4
2,914,541	+		Psyr_2504	0.89	-1.0
2,914,541	+		Psyr_2504	0.89	-1.0
2,914,541	+		Psyr_2504	0.89	-0.8
2,914,541	+		Psyr_2504	0.89	+0.2
2,914,541	+		Psyr_2504	0.89	-1.0
2,914,541	+		Psyr_2504	0.89	+1.6
2,914,542	-		Psyr_2504	0.89	-0.8
2,914,542	-		Psyr_2504	0.89	-0.4
2,914,542	-		Psyr_2504	0.89	-0.6
2,914,542	-		Psyr_2504	0.89	+0.1
2,914,542	-		Psyr_2504	0.89	-1.1
2,914,542	-		Psyr_2504	0.89	+1.6
2,914,542	-		Psyr_2504	0.89	-1.7
2,914,542	-		Psyr_2504	0.89	-0.4
2,914,542	-		Psyr_2504	0.89	-2.2
2,914,542	-		Psyr_2504	0.89	+1.2
2,914,542	-		Psyr_2504	0.89	-0.2
2,914,542	-		Psyr_2504	0.89	+1.3
2,914,542	-		Psyr_2504	0.89	-0.7
2,914,556	+				-0.5
2,914,625	+				+0.1
2,914,625	+				-1.1
2,914,625	+				-0.0
2,914,625	+				-0.0
2,914,625	+				-2.1
2,914,625	+				-0.6
2,914,626	-				+0.2
2,914,626	-				-0.2
2,914,626	-				-0.3
2,914,626	-				+2.9
2,914,626	-				-1.4
2,914,803	-		Psyr_2505	0.27	-0.2
2,914,803	-		Psyr_2505	0.27	-0.5
2,914,856	+		Psyr_2505	0.35	-0.6
2,914,856	+		Psyr_2505	0.35	+1.9
2,914,856	+		Psyr_2505	0.35	-1.8
2,914,857	-		Psyr_2505	0.35	+1.1
2,914,857	-		Psyr_2505	0.35	+0.2
2,914,857	-		Psyr_2505	0.35	+0.2
2,914,857	-		Psyr_2505	0.35	-1.0
2,914,857	-		Psyr_2505	0.35	-0.7
2,914,857	-		Psyr_2505	0.35	+0.5
2,914,857	-		Psyr_2505	0.35	-0.0
2,914,857	-		Psyr_2505	0.35	-1.3
2,914,858	+		Psyr_2505	0.36	-0.9
2,914,858	+		Psyr_2505	0.36	+0.8
2,914,858	+		Psyr_2505	0.36	+1.7
2,914,858	+		Psyr_2505	0.36	-1.6
2,914,858	+		Psyr_2505	0.36	+0.3
2,914,858	+		Psyr_2505	0.36	-0.0
2,915,034	-		Psyr_2505	0.62	-0.0
2,915,195	+		Psyr_2505	0.86	-0.1
2,915,195	+		Psyr_2505	0.86	-1.7
2,915,231	+				+1.6
2,915,231	+				+1.3
2,915,232	-				-0.0
2,915,232	-				+1.3
2,915,232	-				+3.0
2,915,232	-				+0.8
2,915,232	-				+1.3
2,915,335	-				-0.9
2,915,335	-				+1.5
2,915,335	-				-0.3
2,915,481	+		Psyr_2506	0.25	-0.1
2,915,482	-		Psyr_2506	0.26	+0.6