Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2262 and Psyr_2263 overlap by 4 nucleotides Psyr_2263 and Psyr_2264 overlap by 4 nucleotides
Psyr_2262: Psyr_2262 - Peptidase M20:Peptidase M20, at 2,626,882 to 2,628,309
_2262
Psyr_2263: Psyr_2263 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,628,306 to 2,629,328
_2263
Psyr_2264: Psyr_2264 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,629,325 to 2,630,326
_2264
Position (kb)
2628
2629
2630 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2628.008 kb on + strand, within Psyr_2262 at 2628.173 kb on + strand at 2628.613 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.614 kb on - strand, within Psyr_2263 at 2628.614 kb on - strand, within Psyr_2263 at 2628.614 kb on - strand, within Psyr_2263 at 2628.614 kb on - strand, within Psyr_2263 at 2628.677 kb on - strand, within Psyr_2263 at 2628.677 kb on - strand, within Psyr_2263 at 2628.677 kb on - strand, within Psyr_2263 at 2629.075 kb on - strand, within Psyr_2263 at 2629.075 kb on - strand, within Psyr_2263 at 2629.124 kb on + strand, within Psyr_2263 at 2629.257 kb on + strand at 2629.257 kb on + strand at 2629.257 kb on + strand at 2629.258 kb on - strand at 2629.258 kb on - strand at 2629.582 kb on - strand, within Psyr_2264 at 2629.644 kb on + strand, within Psyr_2264 at 2629.644 kb on + strand, within Psyr_2264 at 2629.645 kb on - strand, within Psyr_2264 at 2630.315 kb on + strand at 2630.315 kb on + strand at 2630.316 kb on - strand at 2630.316 kb on - strand at 2630.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 2,628,008 + Psyr_2262 0.79 -0.1 2,628,173 + +1.6 2,628,613 + Psyr_2263 0.30 +1.0 2,628,613 + Psyr_2263 0.30 +1.3 2,628,614 - Psyr_2263 0.30 -0.8 2,628,614 - Psyr_2263 0.30 -1.8 2,628,614 - Psyr_2263 0.30 -0.1 2,628,614 - Psyr_2263 0.30 +0.1 2,628,677 - Psyr_2263 0.36 -2.0 2,628,677 - Psyr_2263 0.36 -0.3 2,628,677 - Psyr_2263 0.36 -1.2 2,629,075 - Psyr_2263 0.75 -1.4 2,629,075 - Psyr_2263 0.75 -1.1 2,629,124 + Psyr_2263 0.80 -2.1 2,629,257 + +1.9 2,629,257 + +0.7 2,629,257 + +0.9 2,629,258 - -0.0 2,629,258 - +1.0 2,629,582 - Psyr_2264 0.26 -0.9 2,629,644 + Psyr_2264 0.32 +1.6 2,629,644 + Psyr_2264 0.32 -1.1 2,629,645 - Psyr_2264 0.32 +2.0 2,630,315 + -0.1 2,630,315 + +1.3 2,630,316 - -1.6 2,630,316 - -0.7 2,630,316 - +0.2
Or see this region's nucleotide sequence