Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2185

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2183 and Psyr_2184 overlap by 4 nucleotidesPsyr_2184 and Psyr_2185 are separated by 89 nucleotidesPsyr_2185 and Psyr_2186 are separated by 48 nucleotides Psyr_2183: Psyr_2183 - transcriptional regulator, GntR family, at 2,537,453 to 2,538,175 _2183 Psyr_2184: Psyr_2184 - Short-chain dehydrogenase/reductase SDR, at 2,538,172 to 2,538,960 _2184 Psyr_2185: Psyr_2185 - Prokaryotic protein of unknown function DUF849, at 2,539,050 to 2,539,982 _2185 Psyr_2186: Psyr_2186 - Senescence marker protein-30 (SMP-30), at 2,540,031 to 2,540,909 _2186 Position (kb) 2539 2540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2538.287 kb on + strand, within Psyr_2184at 2538.287 kb on + strand, within Psyr_2184at 2538.288 kb on - strand, within Psyr_2184at 2538.823 kb on + strand, within Psyr_2184at 2538.824 kb on - strand, within Psyr_2184at 2538.890 kb on + strandat 2538.891 kb on - strandat 2539.076 kb on + strandat 2539.076 kb on + strandat 2539.077 kb on - strandat 2539.526 kb on + strand, within Psyr_2185at 2539.527 kb on - strand, within Psyr_2185at 2539.527 kb on - strand, within Psyr_2185at 2539.566 kb on + strand, within Psyr_2185at 2539.566 kb on + strand, within Psyr_2185at 2539.566 kb on + strand, within Psyr_2185at 2539.567 kb on - strand, within Psyr_2185at 2539.567 kb on - strand, within Psyr_2185at 2539.584 kb on + strand, within Psyr_2185at 2539.584 kb on + strand, within Psyr_2185at 2539.584 kb on + strand, within Psyr_2185at 2539.585 kb on - strand, within Psyr_2185at 2539.807 kb on + strand, within Psyr_2185at 2539.807 kb on + strand, within Psyr_2185at 2539.808 kb on - strand, within Psyr_2185at 2539.808 kb on - strand, within Psyr_2185at 2539.980 kb on + strandat 2540.063 kb on + strandat 2540.064 kb on - strandat 2540.110 kb on - strandat 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.256 kb on + strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.257 kb on - strand, within Psyr_2186at 2540.258 kb on + strand, within Psyr_2186at 2540.506 kb on - strand, within Psyr_2186at 2540.506 kb on - strand, within Psyr_2186at 2540.541 kb on + strand, within Psyr_2186

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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2,538,287 + Psyr_2184 0.15 -0.3
2,538,287 + Psyr_2184 0.15 -2.2
2,538,288 - Psyr_2184 0.15 +0.1
2,538,823 + Psyr_2184 0.83 -1.9
2,538,824 - Psyr_2184 0.83 -0.4
2,538,890 + +0.1
2,538,891 - -0.9
2,539,076 + +0.3
2,539,076 + -1.2
2,539,077 - +0.0
2,539,526 + Psyr_2185 0.51 +0.1
2,539,527 - Psyr_2185 0.51 -0.3
2,539,527 - Psyr_2185 0.51 -1.8
2,539,566 + Psyr_2185 0.55 -0.8
2,539,566 + Psyr_2185 0.55 -0.1
2,539,566 + Psyr_2185 0.55 -1.5
2,539,567 - Psyr_2185 0.55 -2.9
2,539,567 - Psyr_2185 0.55 +1.8
2,539,584 + Psyr_2185 0.57 +0.5
2,539,584 + Psyr_2185 0.57 -2.1
2,539,584 + Psyr_2185 0.57 -0.7
2,539,585 - Psyr_2185 0.57 +0.2
2,539,807 + Psyr_2185 0.81 -2.8
2,539,807 + Psyr_2185 0.81 -1.0
2,539,808 - Psyr_2185 0.81 -1.5
2,539,808 - Psyr_2185 0.81 -0.1
2,539,980 + +0.5
2,540,063 + +0.8
2,540,064 - -0.8
2,540,110 - +0.2
2,540,256 + Psyr_2186 0.26 -0.0
2,540,256 + Psyr_2186 0.26 -0.3
2,540,256 + Psyr_2186 0.26 +1.8
2,540,256 + Psyr_2186 0.26 +0.9
2,540,256 + Psyr_2186 0.26 -2.5
2,540,256 + Psyr_2186 0.26 -2.1
2,540,256 + Psyr_2186 0.26 -1.8
2,540,256 + Psyr_2186 0.26 -2.8
2,540,256 + Psyr_2186 0.26 -1.9
2,540,257 - Psyr_2186 0.26 -0.2
2,540,257 - Psyr_2186 0.26 -0.8
2,540,257 - Psyr_2186 0.26 -0.0
2,540,257 - Psyr_2186 0.26 +0.5
2,540,258 + Psyr_2186 0.26 +0.2
2,540,506 - Psyr_2186 0.54 -0.5
2,540,506 - Psyr_2186 0.54 -0.7
2,540,541 + Psyr_2186 0.58 -0.3

Or see this region's nucleotide sequence