Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2079

Experiment: KB with Methanol 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Methanol 5 vol%
2,423,170	+				+1.0
2,423,170	+				+0.2
2,423,171	-				-0.7
2,423,171	-				-2.5
2,423,182	+				+0.5
2,423,182	+				-1.9
2,423,182	+				+0.5
2,423,183	-				-0.9
2,423,183	-				-4.1
2,423,183	-				-2.5
2,423,189	+				+0.5
2,423,189	+				-0.0
2,423,189	+				-2.6
2,423,190	-				-2.6
2,423,190	-				-2.6
2,423,190	-				+0.8
2,423,196	+				-2.6
2,423,196	+				+1.6
2,423,196	+				+0.2
2,423,196	+				+0.5
2,423,196	+				-1.6
2,423,197	-				+0.3
2,423,197	-				-1.5
2,423,197	-				-2.8
2,423,203	+				+0.5
2,423,203	+				-0.5
2,423,210	+				+0.5
2,423,210	+				-0.2
2,423,211	-				-3.3
2,423,211	-				-1.5
2,423,211	-				+0.1
2,423,211	-				-0.3
2,423,282	+				-2.3
2,424,029	-				+0.5
2,424,189	+				-0.9
2,424,189	+				-1.3
2,424,269	+		Psyr_2079	0.18	+2.1
2,424,269	+		Psyr_2079	0.18	+0.1
2,424,434	+		Psyr_2079	0.45	+0.2
2,424,435	-		Psyr_2079	0.45	-0.3
2,424,584	+		Psyr_2079	0.69	-0.3
2,424,584	+		Psyr_2079	0.69	+0.4
2,424,585	-		Psyr_2079	0.70	-1.2
2,424,588	-		Psyr_2079	0.70	-3.7
2,424,614	+		Psyr_2079	0.74	-0.3
2,424,712	+				-0.0
2,424,712	+				-0.0
2,424,712	+				-0.5
2,424,712	+				+1.2
2,425,085	+		Psyr_2080	0.13	-1.0
2,425,085	+		Psyr_2080	0.13	+0.3
2,425,085	+		Psyr_2080	0.13	-0.5
2,425,085	+		Psyr_2080	0.13	-3.3
2,425,086	-		Psyr_2080	0.13	+0.6
2,425,086	-		Psyr_2080	0.13	+1.1
2,425,086	-		Psyr_2080	0.13	+0.5
2,425,086	-		Psyr_2080	0.13	-0.8
2,425,104	-		Psyr_2080	0.15	-0.6
2,425,668	-		Psyr_2080	0.57	-0.8
2,425,668	-		Psyr_2080	0.57	-1.5
2,425,668	-		Psyr_2080	0.57	-4.3
2,425,697	+		Psyr_2080	0.59	+1.4
2,425,698	-		Psyr_2080	0.59	+1.3