Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1606 and Psyr_1607 are separated by 312 nucleotides Psyr_1607 and Psyr_1608 are separated by 459 nucleotides
Psyr_1606: Psyr_1606 - ABC transporter, periplasmic substrate-binding protein, at 1,805,073 to 1,806,140
_1606
Psyr_1607: Psyr_1607 - transcriptional regulator, GntR family, at 1,806,453 to 1,807,214
_1607
Psyr_1608: Psyr_1608 - ice-nucleation proteins octamer repeat protein, at 1,807,674 to 1,811,720
_1608
Position (kb) 1806
1807
1808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1805.596 kb on - strand, within Psyr_1606 at 1805.596 kb on - strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.647 kb on + strand, within Psyr_1606 at 1805.648 kb on - strand, within Psyr_1606 at 1805.648 kb on - strand, within Psyr_1606 at 1805.737 kb on + strand, within Psyr_1606 at 1805.738 kb on - strand, within Psyr_1606 at 1805.738 kb on - strand, within Psyr_1606 at 1805.806 kb on + strand, within Psyr_1606 at 1805.806 kb on + strand, within Psyr_1606 at 1805.806 kb on + strand, within Psyr_1606 at 1805.807 kb on - strand, within Psyr_1606 at 1805.856 kb on + strand, within Psyr_1606 at 1805.857 kb on - strand, within Psyr_1606 at 1805.857 kb on - strand, within Psyr_1606 at 1805.857 kb on - strand, within Psyr_1606 at 1805.857 kb on - strand, within Psyr_1606 at 1806.060 kb on - strand at 1806.151 kb on + strand at 1806.195 kb on + strand at 1806.195 kb on + strand at 1806.195 kb on + strand at 1806.206 kb on + strand at 1806.206 kb on + strand at 1806.207 kb on - strand at 1806.256 kb on + strand at 1806.305 kb on - strand at 1806.305 kb on - strand at 1806.305 kb on - strand at 1806.305 kb on - strand at 1806.384 kb on + strand at 1806.384 kb on + strand at 1806.400 kb on + strand at 1806.401 kb on - strand at 1806.410 kb on - strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.452 kb on + strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.453 kb on - strand at 1806.461 kb on + strand at 1806.461 kb on + strand at 1806.462 kb on - strand at 1806.475 kb on + strand at 1806.476 kb on - strand at 1806.508 kb on + strand at 1806.508 kb on + strand at 1806.509 kb on - strand at 1806.509 kb on - strand at 1806.726 kb on + strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.928 kb on - strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.181 kb on + strand at 1807.182 kb on - strand at 1807.223 kb on - strand at 1807.279 kb on + strand at 1807.284 kb on - strand at 1807.284 kb on - strand at 1807.419 kb on - strand at 1807.450 kb on - strand at 1807.453 kb on + strand at 1807.492 kb on - strand at 1807.521 kb on + strand at 1807.651 kb on - strand at 1807.651 kb on - strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.660 kb on - strand at 1807.673 kb on - strand at 1807.715 kb on + strand at 1807.715 kb on + strand at 1807.716 kb on - strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.774 kb on - strand at 1807.847 kb on - strand at 1808.077 kb on + strand at 1808.078 kb on - strand at 1808.078 kb on - strand at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.171 kb on - strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 1,805,596 - Psyr_1606 0.49 -2.0 1,805,596 - Psyr_1606 0.49 +1.4 1,805,647 + Psyr_1606 0.54 -0.2 1,805,647 + Psyr_1606 0.54 +0.5 1,805,647 + Psyr_1606 0.54 +0.3 1,805,647 + Psyr_1606 0.54 -0.2 1,805,647 + Psyr_1606 0.54 -0.1 1,805,647 + Psyr_1606 0.54 -2.8 1,805,648 - Psyr_1606 0.54 -1.4 1,805,648 - Psyr_1606 0.54 +0.3 1,805,737 + Psyr_1606 0.62 -0.6 1,805,738 - Psyr_1606 0.62 -1.6 1,805,738 - Psyr_1606 0.62 +0.3 1,805,806 + Psyr_1606 0.69 -0.5 1,805,806 + Psyr_1606 0.69 +0.1 1,805,806 + Psyr_1606 0.69 -0.5 1,805,807 - Psyr_1606 0.69 +1.3 1,805,856 + Psyr_1606 0.73 -1.9 1,805,857 - Psyr_1606 0.73 +1.5 1,805,857 - Psyr_1606 0.73 +0.3 1,805,857 - Psyr_1606 0.73 -0.4 1,805,857 - Psyr_1606 0.73 -1.9 1,806,060 - -0.9 1,806,151 + -0.0 1,806,195 + -1.3 1,806,195 + +3.0 1,806,195 + +0.8 1,806,206 + -0.0 1,806,206 + +1.3 1,806,207 - -0.1 1,806,256 + +0.5 1,806,305 - -1.1 1,806,305 - +1.3 1,806,305 - +1.3 1,806,305 - +0.5 1,806,384 + -2.6 1,806,384 + -0.9 1,806,400 + -1.1 1,806,401 - +0.4 1,806,410 - +0.9 1,806,452 + +2.3 1,806,452 + +0.7 1,806,452 + -0.2 1,806,452 + -0.2 1,806,452 + -0.3 1,806,452 + -0.9 1,806,452 + +1.4 1,806,452 + +0.8 1,806,452 + -0.9 1,806,452 + -0.1 1,806,452 + -0.2 1,806,453 - +0.0 1,806,453 - -0.9 1,806,453 - +0.2 1,806,453 - -0.3 1,806,453 - -2.6 1,806,453 - -1.0 1,806,453 - -3.1 1,806,453 - -1.5 1,806,453 - -0.6 1,806,453 - +1.7 1,806,453 - +3.4 1,806,453 - +0.1 1,806,453 - -0.3 1,806,453 - +0.7 1,806,453 - -0.4 1,806,453 - +1.1 1,806,453 - +0.7 1,806,453 - -0.0 1,806,461 + +0.0 1,806,461 + +0.8 1,806,462 - -0.3 1,806,475 + -0.3 1,806,476 - +0.1 1,806,508 + -0.2 1,806,508 + -0.3 1,806,509 - -1.3 1,806,509 - -0.8 1,806,726 + Psyr_1607 0.36 -1.6 1,806,727 - Psyr_1607 0.36 +2.0 1,806,727 - Psyr_1607 0.36 -1.0 1,806,727 - Psyr_1607 0.36 -3.6 1,806,915 + Psyr_1607 0.61 -1.7 1,806,915 + Psyr_1607 0.61 -2.6 1,806,915 + Psyr_1607 0.61 +0.9 1,806,915 + Psyr_1607 0.61 +0.4 1,806,915 + Psyr_1607 0.61 +1.0 1,806,915 + Psyr_1607 0.61 -1.3 1,806,915 + Psyr_1607 0.61 -1.4 1,806,915 + Psyr_1607 0.61 +0.2 1,806,916 - Psyr_1607 0.61 -0.5 1,806,916 - Psyr_1607 0.61 +0.7 1,806,916 - Psyr_1607 0.61 -1.5 1,806,916 - Psyr_1607 0.61 +0.5 1,806,916 - Psyr_1607 0.61 -2.9 1,806,916 - Psyr_1607 0.61 +0.9 1,806,916 - Psyr_1607 0.61 +1.1 1,806,928 - Psyr_1607 0.62 +0.5 1,806,993 + Psyr_1607 0.71 -0.2 1,806,993 + Psyr_1607 0.71 +0.7 1,806,993 + Psyr_1607 0.71 +1.8 1,806,994 - Psyr_1607 0.71 -1.3 1,806,994 - Psyr_1607 0.71 -0.8 1,807,125 + Psyr_1607 0.88 -0.7 1,807,125 + Psyr_1607 0.88 -1.0 1,807,181 + -0.6 1,807,182 - -0.3 1,807,223 - +1.3 1,807,279 + -0.9 1,807,284 - -1.6 1,807,284 - -2.6 1,807,419 - -1.4 1,807,450 - -0.8 1,807,453 + -0.1 1,807,492 - -1.1 1,807,521 + -1.6 1,807,651 - -3.0 1,807,651 - -2.1 1,807,659 + -0.7 1,807,659 + -1.0 1,807,659 + +0.9 1,807,659 + +1.4 1,807,660 - -1.3 1,807,673 - -0.9 1,807,715 + -0.2 1,807,715 + +1.0 1,807,716 - -2.6 1,807,739 + +0.5 1,807,739 + +1.4 1,807,740 - -0.9 1,807,740 - -0.1 1,807,740 - +1.0 1,807,740 - +1.3 1,807,740 - -1.1 1,807,741 + +0.5 1,807,741 + +0.7 1,807,741 + -0.1 1,807,741 + +0.5 1,807,742 - +0.6 1,807,742 - -0.6 1,807,742 - -0.9 1,807,742 - +0.1 1,807,774 - -0.8 1,807,847 - -0.5 1,808,077 + +0.3 1,808,078 - +2.7 1,808,078 - +1.6 1,808,170 + Psyr_1608 0.12 -0.7 1,808,170 + Psyr_1608 0.12 -0.3 1,808,170 + Psyr_1608 0.12 +1.3 1,808,171 - Psyr_1608 0.12 -0.2 1,808,174 + Psyr_1608 0.12 -1.1 1,808,174 + Psyr_1608 0.12 -0.1
Or see this region's nucleotide sequence