Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1515

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1514 and Psyr_1515 overlap by 4 nucleotidesPsyr_1515 and Psyr_1516 overlap by 11 nucleotides Psyr_1514: Psyr_1514 - type II secretion system protein E, at 1,700,093 to 1,701,724 _1514 Psyr_1515: Psyr_1515 - hypothetical protein, at 1,701,721 to 1,702,323 _1515 Psyr_1516: Psyr_1516 - hypothetical protein, at 1,702,313 to 1,703,671 _1516 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1700.725 kb on + strand, within Psyr_1514at 1700.725 kb on + strand, within Psyr_1514at 1700.812 kb on + strand, within Psyr_1514at 1700.900 kb on + strand, within Psyr_1514at 1700.900 kb on + strand, within Psyr_1514at 1700.900 kb on + strand, within Psyr_1514at 1700.900 kb on + strand, within Psyr_1514at 1700.901 kb on - strand, within Psyr_1514at 1701.000 kb on + strand, within Psyr_1514at 1701.000 kb on + strand, within Psyr_1514at 1701.000 kb on + strand, within Psyr_1514at 1701.000 kb on + strand, within Psyr_1514at 1701.001 kb on - strand, within Psyr_1514at 1701.020 kb on + strand, within Psyr_1514at 1701.020 kb on + strand, within Psyr_1514at 1701.051 kb on - strand, within Psyr_1514at 1701.126 kb on + strand, within Psyr_1514at 1701.127 kb on - strand, within Psyr_1514at 1701.127 kb on - strand, within Psyr_1514at 1701.130 kb on - strand, within Psyr_1514at 1701.130 kb on - strand, within Psyr_1514at 1701.130 kb on - strand, within Psyr_1514at 1701.246 kb on + strand, within Psyr_1514at 1701.246 kb on + strand, within Psyr_1514at 1701.247 kb on - strand, within Psyr_1514at 1701.247 kb on - strand, within Psyr_1514at 1701.247 kb on - strand, within Psyr_1514at 1701.247 kb on - strand, within Psyr_1514at 1701.314 kb on - strand, within Psyr_1514at 1701.314 kb on - strand, within Psyr_1514at 1701.340 kb on + strand, within Psyr_1514at 1701.347 kb on + strand, within Psyr_1514at 1701.347 kb on + strand, within Psyr_1514at 1701.348 kb on - strand, within Psyr_1514at 1701.348 kb on - strand, within Psyr_1514at 1701.349 kb on + strand, within Psyr_1514at 1701.349 kb on + strand, within Psyr_1514at 1701.349 kb on + strand, within Psyr_1514at 1701.349 kb on + strand, within Psyr_1514at 1701.349 kb on + strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.350 kb on - strand, within Psyr_1514at 1701.454 kb on + strand, within Psyr_1514at 1701.454 kb on + strand, within Psyr_1514at 1701.455 kb on - strand, within Psyr_1514at 1701.455 kb on - strand, within Psyr_1514at 1701.455 kb on - strand, within Psyr_1514at 1701.468 kb on + strand, within Psyr_1514at 1701.468 kb on + strand, within Psyr_1514at 1701.468 kb on + strand, within Psyr_1514at 1701.468 kb on + strand, within Psyr_1514at 1701.469 kb on - strand, within Psyr_1514at 1701.469 kb on - strand, within Psyr_1514at 1701.469 kb on - strand, within Psyr_1514at 1701.469 kb on - strand, within Psyr_1514at 1701.469 kb on - strand, within Psyr_1514at 1701.534 kb on - strand, within Psyr_1514at 1701.856 kb on + strand, within Psyr_1515at 1701.856 kb on + strand, within Psyr_1515at 1701.857 kb on - strand, within Psyr_1515at 1701.914 kb on - strand, within Psyr_1515at 1701.914 kb on - strand, within Psyr_1515at 1701.914 kb on - strand, within Psyr_1515at 1701.942 kb on + strand, within Psyr_1515at 1701.982 kb on + strand, within Psyr_1515at 1701.993 kb on - strand, within Psyr_1515at 1701.993 kb on - strand, within Psyr_1515at 1701.993 kb on - strand, within Psyr_1515at 1701.993 kb on - strand, within Psyr_1515at 1702.073 kb on + strand, within Psyr_1515at 1702.073 kb on + strand, within Psyr_1515at 1702.086 kb on + strand, within Psyr_1515at 1702.282 kb on + strandat 1702.282 kb on + strandat 1702.282 kb on + strandat 1702.283 kb on - strandat 1702.283 kb on - strandat 1702.283 kb on - strandat 1702.323 kb on + strandat 1702.323 kb on + strandat 1702.323 kb on + strandat 1702.323 kb on + strandat 1702.323 kb on + strandat 1702.323 kb on + strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.324 kb on - strandat 1702.334 kb on + strandat 1702.335 kb on - strandat 1702.349 kb on + strandat 1702.538 kb on + strand, within Psyr_1516at 1702.539 kb on - strand, within Psyr_1516at 1702.696 kb on + strand, within Psyr_1516at 1702.707 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.761 kb on + strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.762 kb on - strand, within Psyr_1516at 1702.806 kb on - strand, within Psyr_1516at 1702.858 kb on + strand, within Psyr_1516at 1702.866 kb on - strand, within Psyr_1516at 1702.898 kb on + strand, within Psyr_1516at 1702.898 kb on + strand, within Psyr_1516at 1702.898 kb on + strand, within Psyr_1516at 1702.898 kb on + strand, within Psyr_1516at 1702.898 kb on + strand, within Psyr_1516at 1702.899 kb on - strand, within Psyr_1516at 1702.899 kb on - strand, within Psyr_1516at 1702.899 kb on - strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.008 kb on + strand, within Psyr_1516at 1703.009 kb on - strand, within Psyr_1516at 1703.009 kb on - strand, within Psyr_1516at 1703.009 kb on - strand, within Psyr_1516at 1703.121 kb on + strand, within Psyr_1516at 1703.255 kb on + strand, within Psyr_1516at 1703.255 kb on + strand, within Psyr_1516

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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1,700,725 + Psyr_1514 0.39 +1.0
1,700,725 + Psyr_1514 0.39 -0.9
1,700,812 + Psyr_1514 0.44 +0.8
1,700,900 + Psyr_1514 0.49 -0.5
1,700,900 + Psyr_1514 0.49 -0.0
1,700,900 + Psyr_1514 0.49 -1.4
1,700,900 + Psyr_1514 0.49 -1.8
1,700,901 - Psyr_1514 0.50 +0.4
1,701,000 + Psyr_1514 0.56 -1.3
1,701,000 + Psyr_1514 0.56 -0.1
1,701,000 + Psyr_1514 0.56 -0.1
1,701,000 + Psyr_1514 0.56 +1.6
1,701,001 - Psyr_1514 0.56 -2.9
1,701,020 + Psyr_1514 0.57 +2.7
1,701,020 + Psyr_1514 0.57 -1.6
1,701,051 - Psyr_1514 0.59 -0.3
1,701,126 + Psyr_1514 0.63 +1.1
1,701,127 - Psyr_1514 0.63 -1.9
1,701,127 - Psyr_1514 0.63 -0.5
1,701,130 - Psyr_1514 0.64 +1.2
1,701,130 - Psyr_1514 0.64 -0.6
1,701,130 - Psyr_1514 0.64 +0.5
1,701,246 + Psyr_1514 0.71 -1.6
1,701,246 + Psyr_1514 0.71 -0.1
1,701,247 - Psyr_1514 0.71 -1.4
1,701,247 - Psyr_1514 0.71 +0.9
1,701,247 - Psyr_1514 0.71 -0.0
1,701,247 - Psyr_1514 0.71 -0.8
1,701,314 - Psyr_1514 0.75 -2.6
1,701,314 - Psyr_1514 0.75 -0.3
1,701,340 + Psyr_1514 0.76 -0.2
1,701,347 + Psyr_1514 0.77 +0.4
1,701,347 + Psyr_1514 0.77 +1.7
1,701,348 - Psyr_1514 0.77 -1.9
1,701,348 - Psyr_1514 0.77 -1.6
1,701,349 + Psyr_1514 0.77 +0.8
1,701,349 + Psyr_1514 0.77 +0.5
1,701,349 + Psyr_1514 0.77 +0.7
1,701,349 + Psyr_1514 0.77 +2.5
1,701,349 + Psyr_1514 0.77 +0.3
1,701,350 - Psyr_1514 0.77 -0.9
1,701,350 - Psyr_1514 0.77 +1.0
1,701,350 - Psyr_1514 0.77 +0.6
1,701,350 - Psyr_1514 0.77 -1.9
1,701,350 - Psyr_1514 0.77 +0.3
1,701,350 - Psyr_1514 0.77 -2.3
1,701,350 - Psyr_1514 0.77 -0.0
1,701,454 + Psyr_1514 0.83 +0.4
1,701,454 + Psyr_1514 0.83 +0.2
1,701,455 - Psyr_1514 0.83 +0.8
1,701,455 - Psyr_1514 0.83 -1.4
1,701,455 - Psyr_1514 0.83 -3.8
1,701,468 + Psyr_1514 0.84 -2.5
1,701,468 + Psyr_1514 0.84 -0.9
1,701,468 + Psyr_1514 0.84 -0.8
1,701,468 + Psyr_1514 0.84 -2.5
1,701,469 - Psyr_1514 0.84 -0.2
1,701,469 - Psyr_1514 0.84 +1.1
1,701,469 - Psyr_1514 0.84 -1.8
1,701,469 - Psyr_1514 0.84 +1.2
1,701,469 - Psyr_1514 0.84 +3.5
1,701,534 - Psyr_1514 0.88 +0.7
1,701,856 + Psyr_1515 0.22 -2.5
1,701,856 + Psyr_1515 0.22 +0.6
1,701,857 - Psyr_1515 0.23 -1.3
1,701,914 - Psyr_1515 0.32 -2.5
1,701,914 - Psyr_1515 0.32 -1.3
1,701,914 - Psyr_1515 0.32 +0.1
1,701,942 + Psyr_1515 0.37 -1.0
1,701,982 + Psyr_1515 0.43 +0.9
1,701,993 - Psyr_1515 0.45 -1.2
1,701,993 - Psyr_1515 0.45 -3.1
1,701,993 - Psyr_1515 0.45 +0.7
1,701,993 - Psyr_1515 0.45 +0.1
1,702,073 + Psyr_1515 0.58 -0.3
1,702,073 + Psyr_1515 0.58 -0.1
1,702,086 + Psyr_1515 0.61 -1.5
1,702,282 + +1.5
1,702,282 + +0.0
1,702,282 + +0.4
1,702,283 - +0.7
1,702,283 - -0.0
1,702,283 - +0.9
1,702,323 + +1.3
1,702,323 + -2.8
1,702,323 + +1.0
1,702,323 + +0.4
1,702,323 + +0.0
1,702,323 + -0.7
1,702,324 - +0.1
1,702,324 - +1.2
1,702,324 - -1.3
1,702,324 - +0.1
1,702,324 - -0.3
1,702,324 - -0.1
1,702,324 - -0.1
1,702,334 + -1.1
1,702,335 - -2.9
1,702,349 + +0.7
1,702,538 + Psyr_1516 0.17 +1.4
1,702,539 - Psyr_1516 0.17 +0.6
1,702,696 + Psyr_1516 0.28 -1.3
1,702,707 + Psyr_1516 0.29 +0.1
1,702,761 + Psyr_1516 0.33 +1.4
1,702,761 + Psyr_1516 0.33 -3.0
1,702,761 + Psyr_1516 0.33 -1.3
1,702,761 + Psyr_1516 0.33 +0.3
1,702,761 + Psyr_1516 0.33 +0.1
1,702,761 + Psyr_1516 0.33 -0.2
1,702,762 - Psyr_1516 0.33 -0.1
1,702,762 - Psyr_1516 0.33 -1.0
1,702,762 - Psyr_1516 0.33 -2.1
1,702,762 - Psyr_1516 0.33 +0.1
1,702,762 - Psyr_1516 0.33 +1.0
1,702,762 - Psyr_1516 0.33 +0.1
1,702,762 - Psyr_1516 0.33 -0.2
1,702,806 - Psyr_1516 0.36 +0.1
1,702,858 + Psyr_1516 0.40 +0.8
1,702,866 - Psyr_1516 0.41 +0.3
1,702,898 + Psyr_1516 0.43 -2.4
1,702,898 + Psyr_1516 0.43 -1.3
1,702,898 + Psyr_1516 0.43 +1.4
1,702,898 + Psyr_1516 0.43 -0.9
1,702,898 + Psyr_1516 0.43 +0.9
1,702,899 - Psyr_1516 0.43 -0.6
1,702,899 - Psyr_1516 0.43 -0.3
1,702,899 - Psyr_1516 0.43 -0.6
1,703,008 + Psyr_1516 0.51 -1.0
1,703,008 + Psyr_1516 0.51 +0.1
1,703,008 + Psyr_1516 0.51 -0.6
1,703,008 + Psyr_1516 0.51 +0.1
1,703,008 + Psyr_1516 0.51 +1.3
1,703,008 + Psyr_1516 0.51 -1.6
1,703,009 - Psyr_1516 0.51 +0.7
1,703,009 - Psyr_1516 0.51 +0.6
1,703,009 - Psyr_1516 0.51 +0.0
1,703,121 + Psyr_1516 0.59 -0.9
1,703,255 + Psyr_1516 0.69 -0.1
1,703,255 + Psyr_1516 0.69 +0.4

Or see this region's nucleotide sequence