Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1043

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1042 and Psyr_1043 are separated by 46 nucleotidesPsyr_1043 and Psyr_1044 are separated by 87 nucleotides Psyr_1042: Psyr_1042 - Protein of unknown function DUF6, at 1,177,200 to 1,178,102 _1042 Psyr_1043: Psyr_1043 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 1,178,149 to 1,179,123 _1043 Psyr_1044: Psyr_1044 - transcriptional regulator, LysR family, at 1,179,211 to 1,180,209 _1044 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1177.216 kb on - strandat 1177.343 kb on - strand, within Psyr_1042at 1177.343 kb on - strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.812 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.890 kb on + strand, within Psyr_1042at 1177.891 kb on - strand, within Psyr_1042at 1177.904 kb on - strand, within Psyr_1042at 1177.933 kb on - strand, within Psyr_1042at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.751 kb on + strand, within Psyr_1043at 1178.752 kb on - strand, within Psyr_1043at 1178.753 kb on + strand, within Psyr_1043at 1178.753 kb on + strand, within Psyr_1043at 1178.754 kb on - strand, within Psyr_1043at 1178.754 kb on - strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.831 kb on - strand, within Psyr_1043at 1178.873 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.886 kb on - strand, within Psyr_1043at 1178.974 kb on + strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043at 1179.154 kb on + strandat 1179.155 kb on - strandat 1179.205 kb on - strandat 1179.216 kb on - strandat 1179.291 kb on - strandat 1179.338 kb on + strand, within Psyr_1044at 1179.347 kb on + strand, within Psyr_1044at 1179.347 kb on + strand, within Psyr_1044at 1179.348 kb on - strand, within Psyr_1044at 1179.426 kb on - strand, within Psyr_1044at 1179.645 kb on - strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.671 kb on + strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.672 kb on - strand, within Psyr_1044at 1179.675 kb on + strand, within Psyr_1044at 1179.676 kb on - strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.743 kb on + strand, within Psyr_1044at 1179.744 kb on - strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.842 kb on + strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.843 kb on - strand, within Psyr_1044at 1179.965 kb on + strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044at 1180.028 kb on - strand, within Psyr_1044

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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1,177,216 - +0.4
1,177,343 - Psyr_1042 0.16 -2.0
1,177,343 - Psyr_1042 0.16 -0.7
1,177,440 + Psyr_1042 0.27 +0.8
1,177,440 + Psyr_1042 0.27 -1.1
1,177,440 + Psyr_1042 0.27 +0.5
1,177,441 - Psyr_1042 0.27 +0.0
1,177,441 - Psyr_1042 0.27 -0.5
1,177,762 - Psyr_1042 0.62 +1.7
1,177,762 - Psyr_1042 0.62 +1.4
1,177,785 + Psyr_1042 0.65 -2.3
1,177,785 + Psyr_1042 0.65 +1.0
1,177,785 + Psyr_1042 0.65 +0.6
1,177,785 + Psyr_1042 0.65 -1.1
1,177,785 + Psyr_1042 0.65 -1.5
1,177,785 + Psyr_1042 0.65 -2.0
1,177,785 + Psyr_1042 0.65 -1.1
1,177,785 + Psyr_1042 0.65 -1.7
1,177,785 + Psyr_1042 0.65 +0.4
1,177,785 + Psyr_1042 0.65 +0.6
1,177,785 + Psyr_1042 0.65 +0.4
1,177,785 + Psyr_1042 0.65 +0.8
1,177,785 + Psyr_1042 0.65 -0.1
1,177,785 + Psyr_1042 0.65 +0.4
1,177,786 - Psyr_1042 0.65 +0.8
1,177,786 - Psyr_1042 0.65 +0.1
1,177,786 - Psyr_1042 0.65 -1.1
1,177,786 - Psyr_1042 0.65 +0.3
1,177,786 - Psyr_1042 0.65 -1.2
1,177,786 - Psyr_1042 0.65 -1.2
1,177,786 - Psyr_1042 0.65 +0.7
1,177,786 - Psyr_1042 0.65 +1.8
1,177,786 - Psyr_1042 0.65 +0.2
1,177,786 - Psyr_1042 0.65 -1.3
1,177,786 - Psyr_1042 0.65 +0.0
1,177,786 - Psyr_1042 0.65 -0.2
1,177,786 - Psyr_1042 0.65 -2.0
1,177,786 - Psyr_1042 0.65 -2.2
1,177,786 - Psyr_1042 0.65 -0.4
1,177,812 - Psyr_1042 0.68 -0.5
1,177,834 - Psyr_1042 0.70 +0.5
1,177,834 - Psyr_1042 0.70 -0.8
1,177,834 - Psyr_1042 0.70 -0.0
1,177,838 - Psyr_1042 0.71 +1.5
1,177,838 - Psyr_1042 0.71 -0.6
1,177,838 - Psyr_1042 0.71 -0.2
1,177,838 - Psyr_1042 0.71 -0.1
1,177,838 - Psyr_1042 0.71 -0.2
1,177,838 - Psyr_1042 0.71 -0.6
1,177,838 - Psyr_1042 0.71 -1.8
1,177,890 + Psyr_1042 0.76 -1.2
1,177,891 - Psyr_1042 0.77 +0.9
1,177,904 - Psyr_1042 0.78 -0.6
1,177,933 - Psyr_1042 0.81 +0.8
1,178,269 + Psyr_1043 0.12 +0.6
1,178,269 + Psyr_1043 0.12 +1.0
1,178,269 + Psyr_1043 0.12 +2.0
1,178,269 + Psyr_1043 0.12 -0.1
1,178,269 + Psyr_1043 0.12 -0.3
1,178,270 - Psyr_1043 0.12 -2.8
1,178,270 - Psyr_1043 0.12 -1.2
1,178,270 - Psyr_1043 0.12 +0.6
1,178,751 + Psyr_1043 0.62 +1.8
1,178,752 - Psyr_1043 0.62 -0.1
1,178,753 + Psyr_1043 0.62 -0.6
1,178,753 + Psyr_1043 0.62 +1.2
1,178,754 - Psyr_1043 0.62 +0.3
1,178,754 - Psyr_1043 0.62 +0.8
1,178,830 + Psyr_1043 0.70 +2.4
1,178,830 + Psyr_1043 0.70 -0.9
1,178,830 + Psyr_1043 0.70 +0.7
1,178,830 + Psyr_1043 0.70 -0.5
1,178,830 + Psyr_1043 0.70 +1.9
1,178,830 + Psyr_1043 0.70 -0.3
1,178,830 + Psyr_1043 0.70 -2.7
1,178,831 - Psyr_1043 0.70 +0.1
1,178,873 + Psyr_1043 0.74 +1.5
1,178,885 + Psyr_1043 0.75 -0.2
1,178,885 + Psyr_1043 0.75 +1.2
1,178,885 + Psyr_1043 0.75 -0.4
1,178,885 + Psyr_1043 0.75 -1.7
1,178,885 + Psyr_1043 0.75 +0.6
1,178,886 - Psyr_1043 0.76 +2.1
1,178,974 + Psyr_1043 0.85 +2.3
1,178,975 - Psyr_1043 0.85 -1.7
1,178,975 - Psyr_1043 0.85 +1.8
1,178,975 - Psyr_1043 0.85 +0.8
1,179,154 + +0.5
1,179,155 - +1.7
1,179,205 - -0.2
1,179,216 - -2.4
1,179,291 - -1.5
1,179,338 + Psyr_1044 0.13 +2.2
1,179,347 + Psyr_1044 0.14 -1.2
1,179,347 + Psyr_1044 0.14 +0.2
1,179,348 - Psyr_1044 0.14 -0.8
1,179,426 - Psyr_1044 0.22 -1.2
1,179,645 - Psyr_1044 0.43 -0.4
1,179,671 + Psyr_1044 0.46 +2.0
1,179,671 + Psyr_1044 0.46 -2.0
1,179,671 + Psyr_1044 0.46 +0.5
1,179,672 - Psyr_1044 0.46 -0.1
1,179,672 - Psyr_1044 0.46 -0.1
1,179,672 - Psyr_1044 0.46 +2.9
1,179,672 - Psyr_1044 0.46 -0.6
1,179,672 - Psyr_1044 0.46 +0.2
1,179,672 - Psyr_1044 0.46 +0.2
1,179,672 - Psyr_1044 0.46 -0.3
1,179,672 - Psyr_1044 0.46 -2.1
1,179,675 + Psyr_1044 0.46 +0.3
1,179,676 - Psyr_1044 0.47 +0.3
1,179,743 + Psyr_1044 0.53 +0.2
1,179,743 + Psyr_1044 0.53 -1.6
1,179,743 + Psyr_1044 0.53 +0.6
1,179,744 - Psyr_1044 0.53 +0.4
1,179,842 + Psyr_1044 0.63 +0.1
1,179,842 + Psyr_1044 0.63 -0.6
1,179,842 + Psyr_1044 0.63 -0.8
1,179,842 + Psyr_1044 0.63 -2.8
1,179,842 + Psyr_1044 0.63 -0.4
1,179,842 + Psyr_1044 0.63 +0.8
1,179,843 - Psyr_1044 0.63 -1.8
1,179,843 - Psyr_1044 0.63 +1.9
1,179,843 - Psyr_1044 0.63 +1.1
1,179,843 - Psyr_1044 0.63 -0.8
1,179,843 - Psyr_1044 0.63 -0.7
1,179,843 - Psyr_1044 0.63 +2.1
1,179,843 - Psyr_1044 0.63 +0.5
1,179,965 + Psyr_1044 0.75 +0.2
1,180,028 - Psyr_1044 0.82 +0.1
1,180,028 - Psyr_1044 0.82 -0.3
1,180,028 - Psyr_1044 0.82 -4.2

Or see this region's nucleotide sequence