Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0846 and Psyr_0847 are separated by 2 nucleotides Psyr_0847 and Psyr_0848 are separated by 47 nucleotides Psyr_0848 and Psyr_0849 are separated by 170 nucleotides
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390
_0847
Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454
_0848
Psyr_0849: Psyr_0849 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 961,625 to 962,470
_0849
Position (kb) 960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 959.567 kb on + strand, within Psyr_0846 at 959.568 kb on - strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.708 kb on + strand, within Psyr_0846 at 959.709 kb on - strand, within Psyr_0846 at 959.728 kb on + strand at 959.866 kb on + strand at 959.867 kb on - strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.907 kb on + strand at 959.976 kb on + strand, within Psyr_0847 at 959.976 kb on + strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.257 kb on - strand, within Psyr_0847 at 960.388 kb on + strand at 960.388 kb on + strand at 960.397 kb on + strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.423 kb on + strand at 960.702 kb on + strand, within Psyr_0848 at 960.702 kb on + strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.774 kb on + strand, within Psyr_0848 at 960.894 kb on + strand, within Psyr_0848 at 960.936 kb on + strand, within Psyr_0848 at 960.937 kb on - strand, within Psyr_0848 at 960.937 kb on - strand, within Psyr_0848 at 961.107 kb on + strand, within Psyr_0848 at 961.107 kb on + strand, within Psyr_0848 at 961.108 kb on - strand, within Psyr_0848 at 961.108 kb on - strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.179 kb on + strand, within Psyr_0848 at 961.179 kb on + strand, within Psyr_0848 at 961.180 kb on - strand, within Psyr_0848 at 961.180 kb on - strand, within Psyr_0848 at 961.212 kb on + strand, within Psyr_0848 at 961.212 kb on + strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.356 kb on - strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.453 kb on - strand at 961.453 kb on - strand at 961.453 kb on - strand at 961.479 kb on - strand at 961.479 kb on - strand at 961.479 kb on - strand at 961.489 kb on + strand at 961.545 kb on + strand at 961.545 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.618 kb on - strand at 961.618 kb on - strand at 961.678 kb on - strand at 961.682 kb on - strand at 961.682 kb on - strand at 961.741 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.793 kb on + strand, within Psyr_0849 at 961.793 kb on + strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.863 kb on - strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.079 kb on + strand, within Psyr_0849 at 962.080 kb on - strand, within Psyr_0849 at 962.113 kb on + strand, within Psyr_0849 at 962.141 kb on + strand, within Psyr_0849 at 962.141 kb on + strand, within Psyr_0849 at 962.178 kb on + strand, within Psyr_0849 at 962.178 kb on + strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.376 kb on + strand, within Psyr_0849 at 962.409 kb on + strand at 962.420 kb on + strand at 962.444 kb on + strand at 962.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 959,567 + Psyr_0846 0.81 -1.6 959,568 - Psyr_0846 0.81 +0.8 959,642 + Psyr_0846 0.85 -2.0 959,642 + Psyr_0846 0.85 -0.5 959,666 + Psyr_0846 0.87 +0.8 959,666 + Psyr_0846 0.87 +2.3 959,666 + Psyr_0846 0.87 +0.3 959,666 + Psyr_0846 0.87 +0.4 959,666 + Psyr_0846 0.87 +0.5 959,666 + Psyr_0846 0.87 +1.1 959,667 - Psyr_0846 0.87 +1.3 959,667 - Psyr_0846 0.87 -1.8 959,708 + Psyr_0846 0.89 -0.6 959,709 - Psyr_0846 0.89 +0.1 959,728 + +0.4 959,866 + +1.1 959,867 - +0.1 959,894 + -0.5 959,894 + -0.3 959,894 + -0.3 959,894 + +1.4 959,894 + -0.5 959,894 + -0.7 959,894 + +1.8 959,894 + -0.7 959,895 - -0.0 959,895 - -0.2 959,895 - -0.2 959,895 - +0.1 959,895 - +0.6 959,895 - +0.8 959,895 - -0.5 959,895 - -0.7 959,907 + -0.2 959,976 + Psyr_0847 0.16 +0.2 959,976 + Psyr_0847 0.16 -0.4 959,977 - Psyr_0847 0.16 +0.2 959,977 - Psyr_0847 0.16 +1.3 959,977 - Psyr_0847 0.16 +0.7 959,980 + Psyr_0847 0.16 +0.2 959,980 + Psyr_0847 0.16 +1.0 959,980 + Psyr_0847 0.16 -0.9 959,980 + Psyr_0847 0.16 +1.1 959,980 + Psyr_0847 0.16 +1.7 959,980 + Psyr_0847 0.16 +0.5 959,980 + Psyr_0847 0.16 +0.6 959,980 + Psyr_0847 0.16 -0.2 959,981 - Psyr_0847 0.17 -1.8 959,981 - Psyr_0847 0.17 +1.5 959,981 - Psyr_0847 0.17 +1.3 959,981 - Psyr_0847 0.17 -1.8 959,981 - Psyr_0847 0.17 -0.7 959,981 - Psyr_0847 0.17 -0.6 959,981 - Psyr_0847 0.17 -2.4 960,050 + Psyr_0847 0.31 +1.8 960,050 + Psyr_0847 0.31 +1.7 960,051 - Psyr_0847 0.31 +0.7 960,051 - Psyr_0847 0.31 -0.1 960,257 - Psyr_0847 0.73 +0.7 960,388 + -0.5 960,388 + -1.3 960,397 + -1.8 960,398 - +1.9 960,398 - +0.0 960,398 - -1.4 960,423 + +0.2 960,702 + Psyr_0848 0.26 -0.0 960,702 + Psyr_0848 0.26 -0.2 960,703 - Psyr_0848 0.26 +2.4 960,703 - Psyr_0848 0.26 -0.1 960,703 - Psyr_0848 0.26 -0.2 960,774 + Psyr_0848 0.33 +0.3 960,894 + Psyr_0848 0.45 +0.3 960,936 + Psyr_0848 0.49 -0.1 960,937 - Psyr_0848 0.49 +1.1 960,937 - Psyr_0848 0.49 +1.1 961,107 + Psyr_0848 0.66 -2.4 961,107 + Psyr_0848 0.66 +0.5 961,108 - Psyr_0848 0.66 +0.2 961,108 - Psyr_0848 0.66 -0.8 961,152 + Psyr_0848 0.70 -2.2 961,152 + Psyr_0848 0.70 -0.8 961,152 + Psyr_0848 0.70 +1.0 961,152 + Psyr_0848 0.70 +0.8 961,152 + Psyr_0848 0.70 -1.5 961,152 + Psyr_0848 0.70 -2.4 961,153 - Psyr_0848 0.70 +0.0 961,153 - Psyr_0848 0.70 +0.6 961,153 - Psyr_0848 0.70 -1.0 961,153 - Psyr_0848 0.70 -2.6 961,153 - Psyr_0848 0.70 -1.5 961,153 - Psyr_0848 0.70 +0.1 961,153 - Psyr_0848 0.70 +0.2 961,153 - Psyr_0848 0.70 +0.6 961,179 + Psyr_0848 0.73 -1.9 961,179 + Psyr_0848 0.73 +1.1 961,180 - Psyr_0848 0.73 -0.5 961,180 - Psyr_0848 0.73 +1.2 961,212 + Psyr_0848 0.76 -1.1 961,212 + Psyr_0848 0.76 -2.6 961,213 - Psyr_0848 0.76 +0.4 961,213 - Psyr_0848 0.76 -0.4 961,213 - Psyr_0848 0.76 -0.1 961,213 - Psyr_0848 0.76 -2.0 961,356 - +1.9 961,452 + +1.8 961,452 + -0.3 961,452 + -0.5 961,452 + +0.6 961,452 + +1.2 961,452 + +1.4 961,453 - +0.4 961,453 - +0.6 961,453 - -0.2 961,479 - -1.2 961,479 - +0.3 961,479 - +0.8 961,489 + -0.1 961,545 + -0.8 961,545 + +0.9 961,547 + +0.3 961,547 + -1.4 961,547 + +0.4 961,547 + -0.1 961,547 + -0.4 961,618 - -0.8 961,618 - -2.0 961,678 - -1.1 961,682 - -3.6 961,682 - -2.5 961,741 + Psyr_0849 0.14 -1.8 961,745 + Psyr_0849 0.14 -2.0 961,745 + Psyr_0849 0.14 -2.8 961,745 + Psyr_0849 0.14 -0.8 961,745 + Psyr_0849 0.14 -2.8 961,746 - Psyr_0849 0.14 -2.6 961,746 - Psyr_0849 0.14 -3.4 961,746 - Psyr_0849 0.14 -2.5 961,746 - Psyr_0849 0.14 -1.8 961,746 - Psyr_0849 0.14 -1.5 961,746 - Psyr_0849 0.14 -2.5 961,746 - Psyr_0849 0.14 -1.5 961,746 - Psyr_0849 0.14 -3.0 961,746 - Psyr_0849 0.14 -2.5 961,746 - Psyr_0849 0.14 -1.4 961,746 - Psyr_0849 0.14 -3.0 961,746 - Psyr_0849 0.14 -2.4 961,793 + Psyr_0849 0.20 -3.1 961,793 + Psyr_0849 0.20 -2.6 961,794 - Psyr_0849 0.20 -0.6 961,794 - Psyr_0849 0.20 -2.4 961,794 - Psyr_0849 0.20 -3.7 961,863 - Psyr_0849 0.28 -2.4 962,075 + Psyr_0849 0.53 -3.5 962,075 + Psyr_0849 0.53 -2.5 962,075 + Psyr_0849 0.53 -3.4 962,075 + Psyr_0849 0.53 -2.9 962,075 + Psyr_0849 0.53 +0.1 962,075 + Psyr_0849 0.53 -1.0 962,075 + Psyr_0849 0.53 -2.2 962,075 + Psyr_0849 0.53 -2.2 962,075 + Psyr_0849 0.53 -1.2 962,075 + Psyr_0849 0.53 -2.0 962,075 + Psyr_0849 0.53 -2.0 962,075 + Psyr_0849 0.53 -2.2 962,075 + Psyr_0849 0.53 -0.8 962,075 + Psyr_0849 0.53 -2.4 962,075 + Psyr_0849 0.53 -3.2 962,075 + Psyr_0849 0.53 -1.2 962,075 + Psyr_0849 0.53 -1.3 962,075 + Psyr_0849 0.53 +0.5 962,075 + Psyr_0849 0.53 -2.2 962,076 - Psyr_0849 0.53 -4.3 962,076 - Psyr_0849 0.53 -2.6 962,076 - Psyr_0849 0.53 -0.8 962,076 - Psyr_0849 0.53 -2.4 962,076 - Psyr_0849 0.53 -2.4 962,076 - Psyr_0849 0.53 -3.6 962,076 - Psyr_0849 0.53 -2.4 962,076 - Psyr_0849 0.53 -0.8 962,076 - Psyr_0849 0.53 -2.8 962,076 - Psyr_0849 0.53 -2.2 962,076 - Psyr_0849 0.53 -2.9 962,076 - Psyr_0849 0.53 -2.9 962,076 - Psyr_0849 0.53 +1.8 962,076 - Psyr_0849 0.53 -3.3 962,076 - Psyr_0849 0.53 -1.8 962,076 - Psyr_0849 0.53 -4.5 962,076 - Psyr_0849 0.53 -1.5 962,076 - Psyr_0849 0.53 -1.2 962,079 + Psyr_0849 0.54 +0.8 962,080 - Psyr_0849 0.54 -3.4 962,113 + Psyr_0849 0.58 -3.1 962,141 + Psyr_0849 0.61 -2.6 962,141 + Psyr_0849 0.61 -1.2 962,178 + Psyr_0849 0.65 -3.2 962,178 + Psyr_0849 0.65 -1.8 962,179 - Psyr_0849 0.65 -0.2 962,179 - Psyr_0849 0.65 -1.2 962,179 - Psyr_0849 0.65 -3.1 962,294 + Psyr_0849 0.79 -2.6 962,294 + Psyr_0849 0.79 -2.9 962,294 + Psyr_0849 0.79 -2.0 962,294 + Psyr_0849 0.79 -2.6 962,294 + Psyr_0849 0.79 +0.8 962,294 + Psyr_0849 0.79 -2.5 962,295 - Psyr_0849 0.79 -1.2 962,295 - Psyr_0849 0.79 -0.2 962,295 - Psyr_0849 0.79 -0.2 962,295 - Psyr_0849 0.79 -2.5 962,295 - Psyr_0849 0.79 -2.5 962,376 + Psyr_0849 0.89 +0.8 962,409 + +0.8 962,420 + +2.8 962,444 + -2.9 962,452 - -2.0
Or see this region's nucleotide sequence