Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0357

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0356 and Psyr_0357 are separated by 3 nucleotidesPsyr_0357 and Psyr_0358 overlap by 4 nucleotides Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730 _0356 Psyr_0357: Psyr_0357 - Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein, at 382,734 to 383,402 _0357 Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196 _0358 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 381.841 kb on + strandat 381.841 kb on + strandat 382.600 kb on - strand, within Psyr_0356at 382.600 kb on - strand, within Psyr_0356at 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.813 kb on + strand, within Psyr_0357at 382.813 kb on + strand, within Psyr_0357at 382.814 kb on - strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 383.027 kb on + strand, within Psyr_0357at 383.028 kb on - strand, within Psyr_0357at 383.105 kb on + strand, within Psyr_0357at 383.106 kb on - strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.338 kb on + strandat 383.338 kb on + strandat 383.338 kb on + strandat 383.339 kb on - strandat 383.339 kb on - strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.342 kb on - strandat 383.512 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.830 kb on - strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 384.048 kb on + strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.172 kb on + strandat 384.173 kb on - strandat 384.173 kb on - strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.288 kb on - strandat 384.298 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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381,841 + +0.5
381,841 + +0.2
382,600 - Psyr_0356 0.82 +2.1
382,600 - Psyr_0356 0.82 -1.5
382,726 - -0.2
382,726 - -0.1
382,726 - +0.7
382,726 - +0.4
382,813 + Psyr_0357 0.12 -1.9
382,813 + Psyr_0357 0.12 +0.4
382,814 - Psyr_0357 0.12 +1.0
382,834 + Psyr_0357 0.15 -0.4
382,834 + Psyr_0357 0.15 +0.7
382,834 + Psyr_0357 0.15 +0.1
382,834 + Psyr_0357 0.15 -0.6
382,834 + Psyr_0357 0.15 -1.1
382,834 + Psyr_0357 0.15 +1.2
382,834 + Psyr_0357 0.15 -0.2
382,834 + Psyr_0357 0.15 +1.3
382,835 - Psyr_0357 0.15 -0.7
382,835 - Psyr_0357 0.15 +0.9
382,835 - Psyr_0357 0.15 +0.9
382,835 - Psyr_0357 0.15 +0.8
382,835 - Psyr_0357 0.15 +1.9
382,835 - Psyr_0357 0.15 -0.9
382,835 - Psyr_0357 0.15 -0.5
382,835 - Psyr_0357 0.15 +0.4
382,835 - Psyr_0357 0.15 +0.5
382,835 - Psyr_0357 0.15 -0.1
383,027 + Psyr_0357 0.44 +0.2
383,028 - Psyr_0357 0.44 -0.8
383,105 + Psyr_0357 0.55 -0.1
383,106 - Psyr_0357 0.56 -0.2
383,176 + Psyr_0357 0.66 +0.2
383,176 + Psyr_0357 0.66 +0.5
383,177 - Psyr_0357 0.66 -1.4
383,177 - Psyr_0357 0.66 +1.4
383,227 + Psyr_0357 0.74 -0.5
383,227 + Psyr_0357 0.74 -0.8
383,227 + Psyr_0357 0.74 +0.4
383,227 + Psyr_0357 0.74 -1.4
383,227 + Psyr_0357 0.74 +1.0
383,227 + Psyr_0357 0.74 +0.9
383,227 + Psyr_0357 0.74 +0.2
383,227 + Psyr_0357 0.74 -0.6
383,227 + Psyr_0357 0.74 +0.3
383,227 + Psyr_0357 0.74 -3.1
383,227 + Psyr_0357 0.74 +0.0
383,227 + Psyr_0357 0.74 +0.6
383,228 - Psyr_0357 0.74 +1.3
383,228 - Psyr_0357 0.74 +1.4
383,228 - Psyr_0357 0.74 +1.9
383,228 - Psyr_0357 0.74 +0.9
383,228 - Psyr_0357 0.74 +2.7
383,228 - Psyr_0357 0.74 +0.8
383,338 + -0.2
383,338 + -0.1
383,338 + +0.8
383,339 - +0.3
383,339 - -0.2
383,341 + +1.1
383,341 + +1.5
383,341 + -1.2
383,342 - +0.3
383,512 + Psyr_0358 0.14 +0.8
383,636 + Psyr_0358 0.30 -1.1
383,636 + Psyr_0358 0.30 -0.3
383,636 + Psyr_0358 0.30 +1.3
383,636 + Psyr_0358 0.30 -0.0
383,636 + Psyr_0358 0.30 -0.0
383,637 - Psyr_0358 0.30 +0.2
383,637 - Psyr_0358 0.30 -0.2
383,637 - Psyr_0358 0.30 +0.0
383,637 - Psyr_0358 0.30 +3.3
383,674 - Psyr_0358 0.34 -0.9
383,674 - Psyr_0358 0.34 +0.9
383,674 - Psyr_0358 0.34 -2.4
383,674 - Psyr_0358 0.34 +0.5
383,721 + Psyr_0358 0.40 +0.5
383,721 + Psyr_0358 0.40 -0.6
383,721 + Psyr_0358 0.40 -0.4
383,722 - Psyr_0358 0.40 +1.2
383,722 - Psyr_0358 0.40 -0.4
383,830 - Psyr_0358 0.54 -0.9
383,847 + Psyr_0358 0.56 -0.5
383,847 + Psyr_0358 0.56 +3.4
383,847 + Psyr_0358 0.56 +0.9
383,847 + Psyr_0358 0.56 +2.3
383,847 + Psyr_0358 0.56 -1.5
383,848 - Psyr_0358 0.56 -0.3
383,848 - Psyr_0358 0.56 -0.9
383,848 - Psyr_0358 0.56 +0.2
383,848 - Psyr_0358 0.56 +0.1
384,048 + Psyr_0358 0.81 -1.6
384,049 - Psyr_0358 0.81 -0.5
384,049 - Psyr_0358 0.81 -0.0
384,172 + -1.8
384,173 - -1.2
384,173 - +0.6
384,287 + +2.4
384,287 + -0.1
384,287 + -0.2
384,288 - +1.9
384,298 + +0.8
384,331 + -1.1
384,331 + +0.1
384,331 + +1.6
384,331 + +0.6
384,331 + +0.6
384,331 + -0.9
384,331 + +1.6
384,331 + -0.1
384,333 + -0.6
384,333 + -0.4
384,333 + +0.6
384,333 + +0.5
384,333 + +0.6
384,335 + +1.5
384,335 + +0.2
384,335 + -1.9
384,335 + -1.2
384,335 + -0.6
384,336 - -0.1

Or see this region's nucleotide sequence