Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0262

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0260 and Psyr_0261 are separated by 224 nucleotidesPsyr_0261 and Psyr_0262 are separated by 228 nucleotidesPsyr_0262 and Psyr_0263 are separated by 197 nucleotides Psyr_0260: Psyr_0260 - conserved hypothetical protein, at 276,603 to 277,070 _0260 Psyr_0261: Psyr_0261 - conserved hypothetical protein, at 277,295 to 277,582 _0261 Psyr_0262: Psyr_0262 - Transport-associated protein, at 277,811 to 278,650 _0262 Psyr_0263: Psyr_0263 - Two-component response regulator AlgB, at 278,848 to 280,194 _0263 Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 277.071 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.243 kb on + strandat 277.244 kb on - strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.267 kb on - strandat 277.331 kb on + strand, within Psyr_0261at 277.331 kb on + strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.393 kb on + strand, within Psyr_0261at 277.404 kb on + strand, within Psyr_0261at 277.552 kb on + strand, within Psyr_0261at 277.552 kb on + strand, within Psyr_0261at 277.553 kb on - strand, within Psyr_0261at 277.567 kb on + strandat 277.567 kb on + strandat 277.567 kb on + strandat 277.568 kb on - strandat 277.568 kb on - strandat 277.736 kb on - strandat 277.874 kb on - strandat 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 278.650 kb on + strandat 278.651 kb on - strandat 278.706 kb on + strandat 278.706 kb on + strandat 278.736 kb on + strandat 278.737 kb on - strandat 278.753 kb on - strandat 278.753 kb on - strandat 278.814 kb on + strandat 278.814 kb on + strandat 278.840 kb on + strandat 278.944 kb on + strandat 278.945 kb on - strandat 278.945 kb on - strandat 278.945 kb on - strandat 279.002 kb on + strand, within Psyr_0263at 279.003 kb on - strand, within Psyr_0263at 279.163 kb on + strand, within Psyr_0263at 279.164 kb on - strand, within Psyr_0263at 279.650 kb on - strand, within Psyr_0263

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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276,835 + Psyr_0260 0.50 -2.7
276,835 + Psyr_0260 0.50 -2.5
276,835 + Psyr_0260 0.50 +0.3
276,835 + Psyr_0260 0.50 -1.8
276,835 + Psyr_0260 0.50 -0.3
276,835 + Psyr_0260 0.50 +0.7
276,835 + Psyr_0260 0.50 +0.5
276,835 + Psyr_0260 0.50 +0.1
276,835 + Psyr_0260 0.50 +0.2
276,836 - Psyr_0260 0.50 +1.4
276,836 - Psyr_0260 0.50 -0.1
276,836 - Psyr_0260 0.50 +2.1
276,836 - Psyr_0260 0.50 -0.8
276,836 - Psyr_0260 0.50 -0.1
276,836 - Psyr_0260 0.50 +1.2
276,836 - Psyr_0260 0.50 -0.0
276,836 - Psyr_0260 0.50 +0.6
276,836 - Psyr_0260 0.50 +1.6
277,071 + -0.6
277,187 + +0.2
277,187 + -0.4
277,187 + -0.7
277,243 + +0.2
277,244 - +0.3
277,263 + +1.6
277,263 + +1.0
277,263 + +0.1
277,267 - -0.3
277,331 + Psyr_0261 0.12 -0.3
277,331 + Psyr_0261 0.12 +0.7
277,332 - Psyr_0261 0.13 +0.3
277,332 - Psyr_0261 0.13 +0.3
277,332 - Psyr_0261 0.13 -0.1
277,393 + Psyr_0261 0.34 -0.5
277,404 + Psyr_0261 0.38 +0.8
277,552 + Psyr_0261 0.89 -0.4
277,552 + Psyr_0261 0.89 -1.0
277,553 - Psyr_0261 0.90 -3.1
277,567 + +0.7
277,567 + +1.8
277,567 + -2.3
277,568 - +1.0
277,568 - -0.2
277,736 - -3.4
277,874 - -0.0
277,992 + Psyr_0262 0.22 +0.2
277,992 + Psyr_0262 0.22 +0.2
277,992 + Psyr_0262 0.22 +0.1
277,992 + Psyr_0262 0.22 +1.3
277,992 + Psyr_0262 0.22 +1.5
277,992 + Psyr_0262 0.22 -1.6
277,992 + Psyr_0262 0.22 +0.7
277,993 - Psyr_0262 0.22 +1.7
277,993 - Psyr_0262 0.22 +0.3
277,993 - Psyr_0262 0.22 -3.3
277,993 - Psyr_0262 0.22 -1.9
277,993 - Psyr_0262 0.22 +1.6
278,650 + -0.1
278,651 - -0.2
278,706 + -0.7
278,706 + +0.6
278,736 + -0.6
278,737 - +0.8
278,753 - +1.4
278,753 - +0.7
278,814 + +1.0
278,814 + +0.2
278,840 + +0.6
278,944 + -0.1
278,945 - -1.6
278,945 - -0.0
278,945 - -1.8
279,002 + Psyr_0263 0.11 -2.0
279,003 - Psyr_0263 0.12 -1.0
279,163 + Psyr_0263 0.23 -0.0
279,164 - Psyr_0263 0.23 +0.3
279,650 - Psyr_0263 0.60 -0.0

Or see this region's nucleotide sequence