Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0172

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0170 and Psyr_0171 are separated by 167 nucleotidesPsyr_0171 and Psyr_0172 are separated by 16 nucleotidesPsyr_0172 and Psyr_0173 overlap by 4 nucleotides Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427 _0170 Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377 _0171 Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870 _0172 Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772 _0173 Position (kb) 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 185.445 kb on - strandat 185.527 kb on - strandat 185.554 kb on + strandat 185.566 kb on + strandat 185.682 kb on + strand, within Psyr_0171at 185.682 kb on + strand, within Psyr_0171at 185.682 kb on + strand, within Psyr_0171at 185.683 kb on - strand, within Psyr_0171at 185.921 kb on + strand, within Psyr_0171at 186.230 kb on + strand, within Psyr_0171at 186.230 kb on + strand, within Psyr_0171at 186.231 kb on - strand, within Psyr_0171at 186.231 kb on - strand, within Psyr_0171at 186.257 kb on + strand, within Psyr_0171at 186.257 kb on + strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.258 kb on - strand, within Psyr_0171at 186.293 kb on - strand, within Psyr_0171at 186.309 kb on + strandat 186.309 kb on + strandat 186.309 kb on + strandat 186.310 kb on - strandat 186.310 kb on - strandat 186.382 kb on + strandat 186.382 kb on + strandat 186.382 kb on + strandat 186.383 kb on - strandat 186.383 kb on - strandat 186.639 kb on + strand, within Psyr_0172at 186.639 kb on + strand, within Psyr_0172at 186.670 kb on + strand, within Psyr_0172at 186.670 kb on + strand, within Psyr_0172at 186.670 kb on + strand, within Psyr_0172at 186.670 kb on + strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.671 kb on - strand, within Psyr_0172at 186.706 kb on - strand, within Psyr_0172at 186.706 kb on - strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.817 kb on + strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.818 kb on - strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.821 kb on + strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.822 kb on - strand, within Psyr_0172at 186.849 kb on + strandat 186.849 kb on + strandat 186.849 kb on + strandat 186.849 kb on + strandat 186.849 kb on + strandat 186.850 kb on - strandat 186.903 kb on + strandat 186.903 kb on + strandat 186.903 kb on + strandat 186.904 kb on - strandat 186.904 kb on - strandat 186.904 kb on - strandat 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.978 kb on + strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.979 kb on - strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.980 kb on + strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 186.981 kb on - strand, within Psyr_0173at 187.081 kb on - strand, within Psyr_0173at 187.081 kb on - strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.401 kb on + strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.402 kb on - strand, within Psyr_0173at 187.843 kb on - strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.847 kb on + strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.848 kb on - strandat 187.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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185,445 - -2.5
185,527 - +1.1
185,554 + -1.0
185,566 + +0.3
185,682 + Psyr_0171 0.11 -1.0
185,682 + Psyr_0171 0.11 -0.8
185,682 + Psyr_0171 0.11 +1.2
185,683 - Psyr_0171 0.11 -1.0
185,921 + Psyr_0171 0.42 -0.7
186,230 + Psyr_0171 0.81 +0.5
186,230 + Psyr_0171 0.81 -0.6
186,231 - Psyr_0171 0.81 +0.2
186,231 - Psyr_0171 0.81 +0.2
186,257 + Psyr_0171 0.85 -3.0
186,257 + Psyr_0171 0.85 -0.1
186,258 - Psyr_0171 0.85 +0.6
186,258 - Psyr_0171 0.85 +0.8
186,258 - Psyr_0171 0.85 +1.0
186,258 - Psyr_0171 0.85 +0.4
186,258 - Psyr_0171 0.85 +0.8
186,258 - Psyr_0171 0.85 -0.0
186,293 - Psyr_0171 0.89 +0.4
186,309 + -1.8
186,309 + +1.0
186,309 + -0.1
186,310 - -0.9
186,310 - +0.1
186,382 + +0.6
186,382 + +0.7
186,382 + -0.8
186,383 - +0.6
186,383 - +0.2
186,639 + Psyr_0172 0.51 +1.0
186,639 + Psyr_0172 0.51 -0.6
186,670 + Psyr_0172 0.58 +1.4
186,670 + Psyr_0172 0.58 -0.4
186,670 + Psyr_0172 0.58 +1.6
186,670 + Psyr_0172 0.58 -0.3
186,671 - Psyr_0172 0.58 -0.2
186,671 - Psyr_0172 0.58 -3.5
186,671 - Psyr_0172 0.58 -1.1
186,671 - Psyr_0172 0.58 -1.2
186,706 - Psyr_0172 0.65 -2.2
186,706 - Psyr_0172 0.65 +0.1
186,817 + Psyr_0172 0.89 -0.4
186,817 + Psyr_0172 0.89 -1.2
186,817 + Psyr_0172 0.89 +0.1
186,817 + Psyr_0172 0.89 -0.6
186,817 + Psyr_0172 0.89 -0.2
186,817 + Psyr_0172 0.89 -0.0
186,817 + Psyr_0172 0.89 +0.2
186,817 + Psyr_0172 0.89 -1.3
186,817 + Psyr_0172 0.89 -3.7
186,817 + Psyr_0172 0.89 -0.4
186,818 - Psyr_0172 0.89 +0.6
186,818 - Psyr_0172 0.89 +0.4
186,818 - Psyr_0172 0.89 -1.0
186,818 - Psyr_0172 0.89 -0.3
186,818 - Psyr_0172 0.89 +0.5
186,818 - Psyr_0172 0.89 -0.8
186,818 - Psyr_0172 0.89 +0.1
186,821 + Psyr_0172 0.90 +1.3
186,821 + Psyr_0172 0.90 -1.0
186,821 + Psyr_0172 0.90 -2.2
186,821 + Psyr_0172 0.90 -1.7
186,821 + Psyr_0172 0.90 -2.7
186,821 + Psyr_0172 0.90 -0.4
186,821 + Psyr_0172 0.90 -1.1
186,822 - Psyr_0172 0.90 +1.0
186,822 - Psyr_0172 0.90 -1.2
186,822 - Psyr_0172 0.90 -1.0
186,822 - Psyr_0172 0.90 +0.7
186,822 - Psyr_0172 0.90 +0.2
186,822 - Psyr_0172 0.90 +0.5
186,822 - Psyr_0172 0.90 +0.6
186,849 + +0.1
186,849 + +1.8
186,849 + +1.0
186,849 + +1.0
186,849 + -0.7
186,850 - -1.6
186,903 + -0.1
186,903 + +0.6
186,903 + +0.6
186,904 - +1.2
186,904 - -0.4
186,904 - +1.5
186,978 + Psyr_0173 0.12 -0.0
186,978 + Psyr_0173 0.12 +0.4
186,978 + Psyr_0173 0.12 +0.5
186,978 + Psyr_0173 0.12 +1.6
186,978 + Psyr_0173 0.12 +1.2
186,978 + Psyr_0173 0.12 +1.2
186,978 + Psyr_0173 0.12 -0.7
186,978 + Psyr_0173 0.12 +0.2
186,978 + Psyr_0173 0.12 -0.8
186,979 - Psyr_0173 0.12 -1.6
186,979 - Psyr_0173 0.12 -0.5
186,979 - Psyr_0173 0.12 +1.0
186,979 - Psyr_0173 0.12 -0.4
186,979 - Psyr_0173 0.12 +0.9
186,979 - Psyr_0173 0.12 -1.2
186,979 - Psyr_0173 0.12 +0.8
186,980 + Psyr_0173 0.12 -0.9
186,980 + Psyr_0173 0.12 +0.2
186,980 + Psyr_0173 0.12 -0.2
186,981 - Psyr_0173 0.13 +0.6
186,981 - Psyr_0173 0.13 -0.7
186,981 - Psyr_0173 0.13 -1.6
186,981 - Psyr_0173 0.13 +0.3
186,981 - Psyr_0173 0.13 +0.3
186,981 - Psyr_0173 0.13 +1.0
186,981 - Psyr_0173 0.13 -0.2
187,081 - Psyr_0173 0.24 -0.2
187,081 - Psyr_0173 0.24 +1.1
187,401 + Psyr_0173 0.59 +1.8
187,401 + Psyr_0173 0.59 -2.2
187,401 + Psyr_0173 0.59 -0.6
187,401 + Psyr_0173 0.59 -2.3
187,401 + Psyr_0173 0.59 -0.2
187,401 + Psyr_0173 0.59 -0.8
187,401 + Psyr_0173 0.59 -0.0
187,401 + Psyr_0173 0.59 +0.8
187,401 + Psyr_0173 0.59 -2.3
187,401 + Psyr_0173 0.59 -1.5
187,402 - Psyr_0173 0.59 -2.3
187,402 - Psyr_0173 0.59 +2.0
187,402 - Psyr_0173 0.59 -2.6
187,402 - Psyr_0173 0.59 +1.0
187,402 - Psyr_0173 0.59 -0.6
187,402 - Psyr_0173 0.59 -0.5
187,402 - Psyr_0173 0.59 -0.2
187,402 - Psyr_0173 0.59 -0.6
187,843 - -1.4
187,847 + +0.2
187,847 + -0.3
187,847 + -1.2
187,847 + -2.0
187,847 + -0.6
187,847 + +0.4
187,847 + +0.5
187,847 + +1.5
187,847 + -1.1
187,847 + -0.9
187,847 + -0.9
187,848 - +3.4
187,848 - +0.4
187,848 - -2.9
187,848 - +0.7
187,848 - +0.8
187,848 - -1.6
187,848 - +2.3
187,848 - -0.0
187,848 - -0.0
187,848 - -0.3
187,856 + -0.8

Or see this region's nucleotide sequence