Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0154

Experiment: KB with Methanol 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0152 and Psyr_0153 overlap by 22 nucleotidesPsyr_0153 and Psyr_0154 overlap by 4 nucleotidesPsyr_0154 and Psyr_0155 are separated by 1 nucleotidesPsyr_0155 and Psyr_0156 overlap by 4 nucleotides Psyr_0152: Psyr_0152 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:BFD-like [2Fe-2S]-binding region, at 165,081 to 166,490 _0152 Psyr_0153: Psyr_0153 - conserved hypothetical protein, at 166,469 to 166,780 _0153 Psyr_0154: Psyr_0154 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 166,777 to 168,618 _0154 Psyr_0155: Psyr_0155 - Binding-protein-dependent transport systems inner membrane component, at 168,620 to 169,498 _0155 Psyr_0156: Psyr_0156 - Binding-protein-dependent transport systems inner membrane component, at 169,495 to 170,451 _0156 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.820 kb on + strand, within Psyr_0152at 165.820 kb on + strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.821 kb on - strand, within Psyr_0152at 165.952 kb on + strand, within Psyr_0152at 165.953 kb on - strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.970 kb on + strand, within Psyr_0152at 165.971 kb on - strand, within Psyr_0152at 166.060 kb on + strand, within Psyr_0152at 166.060 kb on + strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.061 kb on - strand, within Psyr_0152at 166.216 kb on + strand, within Psyr_0152at 166.285 kb on + strand, within Psyr_0152at 166.285 kb on + strand, within Psyr_0152at 166.285 kb on + strand, within Psyr_0152at 166.286 kb on - strand, within Psyr_0152at 166.330 kb on + strand, within Psyr_0152at 166.331 kb on - strand, within Psyr_0152at 166.331 kb on - strand, within Psyr_0152at 166.649 kb on + strand, within Psyr_0153at 166.649 kb on + strand, within Psyr_0153at 166.650 kb on - strand, within Psyr_0153at 166.650 kb on - strand, within Psyr_0153at 166.734 kb on - strand, within Psyr_0153at 166.734 kb on - strand, within Psyr_0153at 166.734 kb on - strand, within Psyr_0153at 166.784 kb on + strandat 166.784 kb on + strandat 167.063 kb on + strand, within Psyr_0154at 167.064 kb on - strand, within Psyr_0154at 167.064 kb on - strand, within Psyr_0154at 167.126 kb on + strand, within Psyr_0154at 167.126 kb on + strand, within Psyr_0154at 167.126 kb on + strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.127 kb on - strand, within Psyr_0154at 167.190 kb on - strand, within Psyr_0154at 167.254 kb on - strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.447 kb on + strand, within Psyr_0154at 167.448 kb on - strand, within Psyr_0154at 167.448 kb on - strand, within Psyr_0154at 167.448 kb on - strand, within Psyr_0154at 167.448 kb on - strand, within Psyr_0154at 167.448 kb on - strand, within Psyr_0154at 167.871 kb on - strand, within Psyr_0154at 167.871 kb on - strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.339 kb on - strand, within Psyr_0154at 168.339 kb on - strand, within Psyr_0154at 168.794 kb on + strand, within Psyr_0155at 168.794 kb on + strand, within Psyr_0155at 168.795 kb on - strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.951 kb on + strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.291 kb on - strand, within Psyr_0155at 169.562 kb on + strandat 169.563 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
remove
165,820 + Psyr_0152 0.52 +0.9
165,820 + Psyr_0152 0.52 -0.6
165,821 - Psyr_0152 0.52 -0.5
165,821 - Psyr_0152 0.52 +0.9
165,821 - Psyr_0152 0.52 +0.1
165,821 - Psyr_0152 0.52 -0.6
165,821 - Psyr_0152 0.52 -1.3
165,821 - Psyr_0152 0.52 +1.0
165,952 + Psyr_0152 0.62 +0.3
165,953 - Psyr_0152 0.62 +0.1
165,970 + Psyr_0152 0.63 -0.9
165,970 + Psyr_0152 0.63 +1.0
165,970 + Psyr_0152 0.63 -1.3
165,970 + Psyr_0152 0.63 -0.8
165,971 - Psyr_0152 0.63 -0.2
166,060 + Psyr_0152 0.69 -0.0
166,060 + Psyr_0152 0.69 +0.4
166,061 - Psyr_0152 0.70 +0.2
166,061 - Psyr_0152 0.70 -0.7
166,061 - Psyr_0152 0.70 -1.3
166,061 - Psyr_0152 0.70 -0.4
166,216 + Psyr_0152 0.80 -0.5
166,285 + Psyr_0152 0.85 -1.2
166,285 + Psyr_0152 0.85 +0.9
166,285 + Psyr_0152 0.85 +0.0
166,286 - Psyr_0152 0.85 +1.4
166,330 + Psyr_0152 0.89 -0.8
166,331 - Psyr_0152 0.89 -0.6
166,331 - Psyr_0152 0.89 +1.2
166,649 + Psyr_0153 0.58 +1.0
166,649 + Psyr_0153 0.58 -3.0
166,650 - Psyr_0153 0.58 +0.1
166,650 - Psyr_0153 0.58 +0.3
166,734 - Psyr_0153 0.85 +0.5
166,734 - Psyr_0153 0.85 +0.2
166,734 - Psyr_0153 0.85 -1.0
166,784 + +1.2
166,784 + +0.7
167,063 + Psyr_0154 0.16 -1.7
167,064 - Psyr_0154 0.16 +0.5
167,064 - Psyr_0154 0.16 -0.6
167,126 + Psyr_0154 0.19 -0.2
167,126 + Psyr_0154 0.19 +0.8
167,126 + Psyr_0154 0.19 +0.5
167,127 - Psyr_0154 0.19 -0.3
167,127 - Psyr_0154 0.19 +1.2
167,127 - Psyr_0154 0.19 +0.7
167,127 - Psyr_0154 0.19 -0.3
167,127 - Psyr_0154 0.19 +0.7
167,127 - Psyr_0154 0.19 +0.9
167,127 - Psyr_0154 0.19 +0.4
167,127 - Psyr_0154 0.19 -0.5
167,127 - Psyr_0154 0.19 -0.0
167,190 - Psyr_0154 0.22 +1.3
167,254 - Psyr_0154 0.26 -0.6
167,447 + Psyr_0154 0.36 +2.2
167,447 + Psyr_0154 0.36 +0.1
167,447 + Psyr_0154 0.36 +2.5
167,447 + Psyr_0154 0.36 +0.2
167,447 + Psyr_0154 0.36 -1.0
167,447 + Psyr_0154 0.36 +1.2
167,447 + Psyr_0154 0.36 +1.9
167,448 - Psyr_0154 0.36 +0.2
167,448 - Psyr_0154 0.36 +0.2
167,448 - Psyr_0154 0.36 +0.5
167,448 - Psyr_0154 0.36 -2.8
167,448 - Psyr_0154 0.36 +0.4
167,871 - Psyr_0154 0.59 +0.6
167,871 - Psyr_0154 0.59 -0.3
167,990 + Psyr_0154 0.66 +0.5
167,990 + Psyr_0154 0.66 -1.6
167,990 + Psyr_0154 0.66 +1.3
167,990 + Psyr_0154 0.66 +0.1
167,990 + Psyr_0154 0.66 +0.6
167,990 + Psyr_0154 0.66 -0.1
167,990 + Psyr_0154 0.66 +0.3
167,991 - Psyr_0154 0.66 +0.2
167,991 - Psyr_0154 0.66 -3.1
167,991 - Psyr_0154 0.66 +1.2
167,991 - Psyr_0154 0.66 +1.3
167,991 - Psyr_0154 0.66 +1.8
167,991 - Psyr_0154 0.66 -0.1
167,991 - Psyr_0154 0.66 +0.7
167,991 - Psyr_0154 0.66 -1.2
167,991 - Psyr_0154 0.66 -1.3
167,991 - Psyr_0154 0.66 +0.5
167,991 - Psyr_0154 0.66 +1.3
167,991 - Psyr_0154 0.66 -0.1
168,338 + Psyr_0154 0.85 -0.0
168,338 + Psyr_0154 0.85 +1.2
168,338 + Psyr_0154 0.85 +0.9
168,338 + Psyr_0154 0.85 +0.4
168,339 - Psyr_0154 0.85 -1.0
168,339 - Psyr_0154 0.85 -0.8
168,794 + Psyr_0155 0.20 +0.6
168,794 + Psyr_0155 0.20 +1.7
168,795 - Psyr_0155 0.20 +1.6
168,912 + Psyr_0155 0.33 +0.1
168,912 + Psyr_0155 0.33 +0.3
168,912 + Psyr_0155 0.33 +0.1
168,912 + Psyr_0155 0.33 -0.4
168,912 + Psyr_0155 0.33 -1.0
168,912 + Psyr_0155 0.33 -0.5
168,912 + Psyr_0155 0.33 -0.2
168,912 + Psyr_0155 0.33 +0.7
168,912 + Psyr_0155 0.33 -0.0
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 +0.1
168,912 + Psyr_0155 0.33 +0.7
168,912 + Psyr_0155 0.33 -0.0
168,913 - Psyr_0155 0.33 +0.8
168,913 - Psyr_0155 0.33 +0.2
168,913 - Psyr_0155 0.33 -0.0
168,913 - Psyr_0155 0.33 -0.8
168,913 - Psyr_0155 0.33 -1.1
168,913 - Psyr_0155 0.33 +0.5
168,913 - Psyr_0155 0.33 +1.2
168,913 - Psyr_0155 0.33 -0.7
168,913 - Psyr_0155 0.33 -0.6
168,913 - Psyr_0155 0.33 +0.9
168,913 - Psyr_0155 0.33 +0.7
168,913 - Psyr_0155 0.33 -0.3
168,913 - Psyr_0155 0.33 -0.1
168,916 + Psyr_0155 0.34 +1.0
168,916 + Psyr_0155 0.34 -0.1
168,917 - Psyr_0155 0.34 -1.2
168,917 - Psyr_0155 0.34 +0.2
168,951 + Psyr_0155 0.38 +0.6
168,952 - Psyr_0155 0.38 -0.1
168,952 - Psyr_0155 0.38 +0.1
169,011 + Psyr_0155 0.44 +0.6
169,011 + Psyr_0155 0.44 +0.7
169,011 + Psyr_0155 0.44 -0.9
169,272 + Psyr_0155 0.74 -0.9
169,272 + Psyr_0155 0.74 -3.1
169,272 + Psyr_0155 0.74 -0.3
169,273 - Psyr_0155 0.74 +1.2
169,273 - Psyr_0155 0.74 +1.0
169,291 - Psyr_0155 0.76 +1.6
169,562 + -2.5
169,563 - -1.2

Or see this region's nucleotide sequence