Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01685

Experiment: D-Glucose 80 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01680 and BWI76_RS01685 are separated by 196 nucleotidesBWI76_RS01685 and BWI76_RS01690 are separated by 185 nucleotides BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954 _RS01680 BWI76_RS01685: BWI76_RS01685 - methionine synthase, at 343,151 to 346,834 _RS01685 BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651 _RS01690 Position (kb) 343 344 345 346 347Strain fitness (log2 ratio) -2 -1 0 1at 342.297 kb on - strand, within BWI76_RS01680at 342.302 kb on - strand, within BWI76_RS01680at 342.323 kb on - strand, within BWI76_RS01680at 342.379 kb on - strand, within BWI76_RS01680at 342.413 kb on - strand, within BWI76_RS01680at 342.525 kb on + strand, within BWI76_RS01680at 342.533 kb on - strand, within BWI76_RS01680at 342.533 kb on - strand, within BWI76_RS01680at 342.773 kb on + strand, within BWI76_RS01680at 343.064 kb on - strandat 343.148 kb on + strandat 343.148 kb on + strandat 343.148 kb on + strandat 343.332 kb on - strandat 343.406 kb on - strandat 343.456 kb on + strandat 343.461 kb on + strandat 343.498 kb on + strandat 343.606 kb on + strand, within BWI76_RS01685at 343.627 kb on + strand, within BWI76_RS01685at 343.646 kb on - strand, within BWI76_RS01685at 343.880 kb on + strand, within BWI76_RS01685at 343.930 kb on - strand, within BWI76_RS01685at 344.059 kb on + strand, within BWI76_RS01685at 344.495 kb on - strand, within BWI76_RS01685at 344.500 kb on - strand, within BWI76_RS01685at 344.505 kb on - strand, within BWI76_RS01685at 344.523 kb on + strand, within BWI76_RS01685at 344.691 kb on - strand, within BWI76_RS01685at 344.742 kb on + strand, within BWI76_RS01685at 344.742 kb on + strand, within BWI76_RS01685at 344.742 kb on + strand, within BWI76_RS01685at 344.902 kb on - strand, within BWI76_RS01685at 345.344 kb on + strand, within BWI76_RS01685at 345.350 kb on - strand, within BWI76_RS01685at 345.350 kb on - strand, within BWI76_RS01685at 345.702 kb on - strand, within BWI76_RS01685at 345.702 kb on - strand, within BWI76_RS01685at 345.702 kb on - strand, within BWI76_RS01685at 345.713 kb on - strand, within BWI76_RS01685at 345.938 kb on + strand, within BWI76_RS01685at 345.971 kb on - strandat 346.016 kb on - strand, within BWI76_RS01685at 346.086 kb on - strand, within BWI76_RS01685at 346.116 kb on - strand, within BWI76_RS01685at 346.329 kb on + strand, within BWI76_RS01685at 346.413 kb on - strand, within BWI76_RS01685at 346.575 kb on + strandat 346.610 kb on - strandat 346.756 kb on - strandat 346.872 kb on + strandat 346.909 kb on + strandat 346.909 kb on + strandat 346.910 kb on - strandat 346.983 kb on - strandat 347.029 kb on + strandat 347.043 kb on - strandat 347.097 kb on - strandat 347.097 kb on - strandat 347.121 kb on - strandat 347.263 kb on + strand, within BWI76_RS01690at 347.321 kb on + strand, within BWI76_RS01690at 347.478 kb on - strand, within BWI76_RS01690at 347.495 kb on - strand, within BWI76_RS01690at 347.657 kb on - strand, within BWI76_RS01690at 347.813 kb on - strand, within BWI76_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 80 mM (C)
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342,297 - BWI76_RS01680 0.21 -0.5
342,302 - BWI76_RS01680 0.21 +0.1
342,323 - BWI76_RS01680 0.24 +0.3
342,379 - BWI76_RS01680 0.30 -0.3
342,413 - BWI76_RS01680 0.35 -0.6
342,525 + BWI76_RS01680 0.48 -0.4
342,533 - BWI76_RS01680 0.49 -0.3
342,533 - BWI76_RS01680 0.49 -0.4
342,773 + BWI76_RS01680 0.78 +0.2
343,064 - +0.2
343,148 + -0.0
343,148 + -0.1
343,148 + -0.1
343,332 - -0.7
343,406 - -0.7
343,456 + -0.6
343,461 + -0.5
343,498 + -1.2
343,606 + BWI76_RS01685 0.12 -0.7
343,627 + BWI76_RS01685 0.13 -2.0
343,646 - BWI76_RS01685 0.13 -0.8
343,880 + BWI76_RS01685 0.20 -1.9
343,930 - BWI76_RS01685 0.21 -0.5
344,059 + BWI76_RS01685 0.25 -0.8
344,495 - BWI76_RS01685 0.36 -0.3
344,500 - BWI76_RS01685 0.37 -1.3
344,505 - BWI76_RS01685 0.37 -0.5
344,523 + BWI76_RS01685 0.37 -0.8
344,691 - BWI76_RS01685 0.42 +0.0
344,742 + BWI76_RS01685 0.43 -1.7
344,742 + BWI76_RS01685 0.43 -1.0
344,742 + BWI76_RS01685 0.43 -0.7
344,902 - BWI76_RS01685 0.48 -0.2
345,344 + BWI76_RS01685 0.60 -1.4
345,350 - BWI76_RS01685 0.60 -1.0
345,350 - BWI76_RS01685 0.60 -1.5
345,702 - BWI76_RS01685 0.69 -0.6
345,702 - BWI76_RS01685 0.69 +0.3
345,702 - BWI76_RS01685 0.69 -0.8
345,713 - BWI76_RS01685 0.70 +0.5
345,938 + BWI76_RS01685 0.76 -0.7
345,971 - -0.9
346,016 - BWI76_RS01685 0.78 -1.0
346,086 - BWI76_RS01685 0.80 -0.8
346,116 - BWI76_RS01685 0.80 -0.9
346,329 + BWI76_RS01685 0.86 -0.1
346,413 - BWI76_RS01685 0.89 -0.8
346,575 + +1.1
346,610 - -0.1
346,756 - -0.9
346,872 + -1.6
346,909 + +0.1
346,909 + +0.1
346,910 - -0.1
346,983 - -0.1
347,029 + +0.1
347,043 - +1.2
347,097 - +0.2
347,097 - +0.2
347,121 - +0.5
347,263 + BWI76_RS01690 0.15 +1.1
347,321 + BWI76_RS01690 0.18 -0.1
347,478 - BWI76_RS01690 0.28 +1.5
347,495 - BWI76_RS01690 0.29 -0.1
347,657 - BWI76_RS01690 0.39 -0.7
347,813 - BWI76_RS01690 0.49 +1.1

Or see this region's nucleotide sequence