Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3564

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
4,609,466	-				-1.8
4,609,508	-		BT3563	0.12	-0.3
4,609,591	-		BT3563	0.21	-1.0
4,609,594	+		BT3563	0.22	-3.5
4,609,598	+		BT3563	0.22	+0.2
4,609,599	-		BT3563	0.22	-0.9
4,609,599	-		BT3563	0.22	-1.2
4,609,600	+		BT3563	0.22	+0.1
4,609,604	-		BT3563	0.23	-0.7
4,609,610	+		BT3563	0.23	-0.9
4,609,611	-		BT3563	0.24	-0.8
4,609,652	+		BT3563	0.28	-2.5
4,609,652	+		BT3563	0.28	-0.4
4,609,657	+		BT3563	0.29	+1.1
4,609,657	+		BT3563	0.29	-1.5
4,609,663	-		BT3563	0.29	+0.5
4,609,687	+		BT3563	0.32	-0.2
4,609,791	-		BT3563	0.44	+0.4
4,609,805	-		BT3563	0.46	-3.0
4,609,860	-		BT3563	0.52	-2.9
4,609,863	-		BT3563	0.52	-1.7
4,609,864	+		BT3563	0.52	-1.0
4,609,870	+		BT3563	0.53	-0.0
4,609,890	-		BT3563	0.55	-1.2
4,609,903	+		BT3563	0.57	-1.0
4,609,940	-		BT3563	0.61	-2.0
4,609,954	+		BT3563	0.62	-1.4
4,609,955	-		BT3563	0.63	-1.7
4,609,976	+		BT3563	0.65	+0.1
4,609,976	+		BT3563	0.65	-1.0
4,609,997	-		BT3563	0.67	+1.4
4,610,017	-		BT3563	0.70	+0.3
4,610,017	-		BT3563	0.70	-2.7
4,610,024	+		BT3563	0.70	-2.4
4,610,026	+		BT3563	0.71	+0.4
4,610,026	+		BT3563	0.71	+0.3
4,610,027	-		BT3563	0.71	-3.0
4,610,027	-		BT3563	0.71	+1.2
4,610,027	-		BT3563	0.71	-0.5
4,610,060	+		BT3563	0.74	-0.2
4,610,101	+		BT3563	0.79	+0.6
4,610,134	+		BT3563	0.83	-0.8
4,610,135	-		BT3563	0.83	-0.3
4,610,152	-		BT3563	0.85	-1.0
4,610,165	-		BT3563	0.86	+1.3
4,610,191	-		BT3563	0.89	+0.3
4,610,212	+				-0.1
4,610,242	-				+0.6
4,610,248	+				-1.2
4,610,248	+				-0.3
4,610,252	+				+1.6
4,610,259	+				-2.1
4,610,288	-				-1.3
4,610,302	-				-1.9
4,610,303	+				+0.4
4,610,309	+				-1.1
4,610,313	+				-0.9
4,610,345	-				-2.9
4,610,379	-				-0.4
4,610,380	+				-0.9
4,610,383	-				-1.0
4,610,383	-				-0.2
4,610,383	-				-2.6
4,610,388	+				+0.9
4,610,388	+				+0.0
4,610,398	+				-0.3
4,610,403	+				-2.6
4,610,403	+				-0.8
4,610,404	-				-1.4
4,610,404	-				-0.4
4,610,436	-				-2.8
4,610,436	-				-0.4
4,610,436	-				-2.3
4,610,441	-				+0.3
4,610,470	+				+0.4
4,610,471	-				-1.7
4,610,518	+		BT3564	0.14	-1.7
4,610,519	-		BT3564	0.14	-1.2
4,610,522	+		BT3564	0.15	+1.6
4,610,523	-		BT3564	0.15	-0.1
4,610,702	+		BT3564	0.56	+1.6
4,610,702	+		BT3564	0.56	+0.6
4,610,715	+		BT3564	0.59	+0.6
4,610,716	-		BT3564	0.59	-1.8
4,610,780	-		BT3564	0.73	+1.2
4,610,785	+		BT3564	0.75	-0.1
4,610,856	+				-2.1
4,611,016	+				-1.6
4,611,140	-				-0.5
4,611,141	+				-0.6
4,611,142	-				-0.6
4,611,151	-				-2.0
4,611,151	-				+0.6
4,611,159	+				+0.6
4,611,160	-				-0.9
4,611,168	-				-1.2
4,611,169	+				-2.4
4,611,169	+				-0.6
4,611,170	-				-2.1
4,611,189	-				-2.9
4,611,197	+				-1.8
4,611,247	+				+0.9
4,611,247	+				+0.6
4,611,248	-				-2.1
4,611,248	-				-0.0
4,611,252	+				-0.2
4,611,266	-				+1.2
4,611,272	+				-1.9
4,611,370	+				-1.7
4,611,418	-				-1.1
4,611,418	-				-2.2
4,611,449	+				-1.3
4,611,458	+				-1.2
4,611,497	+				-1.5
4,611,514	-				+0.3
4,611,549	-				-2.0
4,611,593	+				-0.3
4,611,631	-				-0.8
4,611,669	+				-2.2
4,611,711	+				-1.4
4,611,712	-				-2.4
4,611,712	-				-1.9
4,611,714	+				-1.0
4,611,729	-				+0.8
4,611,736	-				-0.6
4,611,740	-				-1.1
4,611,749	-				+0.7
4,611,757	-				-1.6
4,611,771	-				-0.8
4,611,775	+				-0.6
4,611,775	+				+0.7
4,611,776	-				+1.3
4,611,805	-				-0.7
4,611,843	-				-0.1
4,611,870	-				+0.3