Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3365

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3363 and BT3364 are separated by 40 nucleotidesBT3364 and BT3365 are separated by 20 nucleotidesBT3365 and BT3366 are separated by 162 nucleotides BT3363: BT3363 - lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file), at 4,337,976 to 4,338,950 BT3363 BT3364: BT3364 - hypothetical protein (NCBI ptt file), at 4,338,991 to 4,339,734 BT3364 BT3365: BT3365 - putative glycosyltransferase (NCBI ptt file), at 4,339,755 to 4,341,794 BT3365 BT3366: BT3366 - putative glycosyltransferase yibD (NCBI ptt file), at 4,341,957 to 4,342,967 BT3366 Position (kb) 4339 4340 4341 4342Strain fitness (log2 ratio) -3 -2 -1 0 1at 4339.732 kb on + strandat 4341.779 kb on + strandat 4341.779 kb on + strandat 4341.779 kb on + strandat 4341.799 kb on + strandat 4341.799 kb on + strandat 4341.823 kb on - strandat 4341.896 kb on + strandat 4341.908 kb on + strandat 4341.912 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
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4,339,732 + -1.5
4,341,779 + -2.3
4,341,779 + -0.9
4,341,779 + -2.3
4,341,799 + -3.0
4,341,799 + -1.4
4,341,823 - +1.7
4,341,896 + -0.3
4,341,908 + -0.4
4,341,912 + -0.9

Or see this region's nucleotide sequence