Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2944

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
3,705,088	+		BT2943	0.82	-4.3
3,705,124	+		BT2943	0.84	-1.9
3,705,138	-		BT2943	0.85	-1.9
3,705,170	+		BT2943	0.87	-1.3
3,705,170	+		BT2943	0.87	-1.8
3,705,203	-		BT2943	0.89	-2.7
3,705,205	+		BT2943	0.89	-0.4
3,705,211	+		BT2943	0.89	+0.3
3,705,211	+		BT2943	0.89	-2.3
3,705,211	+		BT2943	0.89	+3.8
3,705,212	-		BT2943	0.89	-1.8
3,705,212	-		BT2943	0.89	-0.8
3,705,270	+				+0.1
3,705,274	-				+2.2
3,705,274	-				-1.2
3,705,274	-				-1.5
3,705,286	+				-1.4
3,705,287	-				+1.2
3,705,287	-				-1.1
3,705,297	-				+0.4
3,705,297	-				+0.2
3,705,297	-				-1.5
3,705,314	+				-0.9
3,705,326	+				-1.7
3,705,373	+				-1.2
3,705,384	-				-1.2
3,705,508	+				-1.1
3,705,562	+				-1.1
3,705,592	-				-1.6
3,705,660	+				-1.0
3,705,722	-				-4.0
3,705,724	-				-1.0
3,705,737	-				-1.4
3,705,740	-				-3.0
3,705,761	-				+0.0
3,705,766	-				-1.6
3,705,793	+				-0.2
3,705,851	-				-1.0
3,705,852	+				+0.9
3,705,853	-				-1.3
3,705,863	-				-1.4
3,705,863	-				-0.4
3,705,874	+				-0.3
3,705,875	-				+1.6
3,705,875	-				-1.2
3,705,883	-				-1.4
3,705,907	+				-1.4
3,705,907	+				+1.9
3,705,920	+				-0.9
3,705,921	-				-2.0
3,705,921	-				+1.4
3,705,921	-				-1.6
3,705,922	+				-3.4
3,705,930	+				+0.6
3,705,931	-				-2.2
3,705,943	+				-0.9
3,705,943	+				+0.1
3,705,987	+				+1.2
3,705,988	-				-1.7
3,706,007	-				-1.1
3,706,010	-				-0.3
3,706,032	-				-0.7
3,706,032	-				-3.3
3,706,035	+				-0.5
3,706,036	-				-1.0
3,706,036	-				+1.8
3,706,040	+				-2.4
3,706,053	+				+0.4
3,706,337	+		BT2944	0.24	+8.8
3,706,439	+		BT2944	0.33	+0.3
3,706,464	+		BT2944	0.35	+3.7
3,706,464	+		BT2944	0.35	+4.4
3,706,464	+		BT2944	0.35	+4.7
3,706,564	-		BT2944	0.44	+4.7
3,706,565	+		BT2944	0.44	+4.1
3,706,565	+		BT2944	0.44	+3.3
3,706,695	-		BT2944	0.55	+3.3
3,706,763	-		BT2944	0.61	+3.7
3,706,763	-		BT2944	0.61	+4.3
3,706,775	+		BT2944	0.62	+4.3
3,706,823	+		BT2944	0.66	+2.1
3,706,823	+		BT2944	0.66	+2.0
3,706,823	+		BT2944	0.66	+4.2
3,706,823	+		BT2944	0.66	+3.4
3,706,824	-		BT2944	0.67	+2.2
3,706,824	-		BT2944	0.67	+3.3
3,706,826	+		BT2944	0.67	+2.4
3,706,827	-		BT2944	0.67	+4.2
3,706,828	+		BT2944	0.67	+3.4
3,706,910	+		BT2944	0.74	+4.4
3,706,926	+		BT2944	0.76	+3.8
3,706,994	-		BT2944	0.82	+3.5
3,707,030	-		BT2944	0.85	+1.6
3,707,030	-		BT2944	0.85	+3.7
3,707,059	-		BT2944	0.87	+4.5
3,707,140	-				+4.4
3,707,214	+				+2.9
3,707,221	+				+3.2
3,707,224	-				-1.6
3,707,224	-				-2.0
3,707,253	+				+3.7
3,707,283	-				+2.6
3,707,359	-				+2.7
3,707,392	+		BT2945	0.12	+4.2
3,707,402	+		BT2945	0.12	+2.8
3,707,464	-		BT2945	0.18	+4.5
3,707,577	-		BT2945	0.27	+3.5
3,707,604	+		BT2945	0.29	+3.2
3,707,766	-		BT2945	0.43	+1.5
3,707,766	-		BT2945	0.43	+3.9
3,707,910	+		BT2945	0.55	+3.4
3,708,025	+		BT2945	0.64	+2.3
3,708,059	-		BT2945	0.67	+4.0
3,708,092	+		BT2945	0.70	+4.3
3,708,125	-		BT2945	0.73	+3.3
3,708,138	+		BT2945	0.74	+3.0
3,708,171	+		BT2945	0.76	+4.2