Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2510

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
3,133,341	-		BT2509	0.24	-0.8
3,133,412	+		BT2509	0.32	-0.7
3,133,413	-		BT2509	0.32	+0.2
3,133,413	-		BT2509	0.32	-0.8
3,133,434	+		BT2509	0.35	-0.7
3,133,434	+		BT2509	0.35	-0.2
3,133,478	-		BT2509	0.40	-0.8
3,133,528	-		BT2509	0.45	-0.2
3,133,532	-		BT2509	0.46	-1.4
3,133,561	-				+0.5
3,133,610	-		BT2509	0.54	+0.2
3,133,610	-		BT2509	0.54	-2.2
3,133,612	-		BT2509	0.54	-0.6
3,133,630	+		BT2509	0.56	-1.9
3,133,631	-		BT2509	0.57	-0.0
3,133,634	-		BT2509	0.57	-2.3
3,133,641	+		BT2509	0.58	-1.5
3,133,641	+		BT2509	0.58	-0.1
3,133,642	-		BT2509	0.58	-3.9
3,133,642	-		BT2509	0.58	-1.3
3,133,642	-		BT2509	0.58	-0.8
3,133,642	-		BT2509	0.58	-0.8
3,133,677	-		BT2509	0.62	-0.1
3,133,690	-		BT2509	0.63	-0.2
3,133,691	+		BT2509	0.63	-1.5
3,133,698	+		BT2509	0.64	-4.4
3,133,698	+		BT2509	0.64	+1.2
3,133,740	+		BT2509	0.69	-1.5
3,133,770	+		BT2509	0.72	-1.0
3,133,771	-		BT2509	0.72	-2.6
3,133,791	+		BT2509	0.74	-2.9
3,133,816	+		BT2509	0.77	-2.8
3,133,817	-		BT2509	0.77	-3.1
3,133,818	+		BT2509	0.77	-0.8
3,133,818	+		BT2509	0.77	-0.5
3,133,818	+		BT2509	0.77	-0.8
3,133,821	+		BT2509	0.78	+1.4
3,133,822	-		BT2509	0.78	-1.8
3,133,893	-		BT2509	0.86	+0.1
3,133,926	-		BT2509	0.89	+1.5
3,133,946	+				+0.3
3,133,952	+				-1.2
3,133,953	-				-1.8
3,133,995	-				-0.6
3,134,008	-				-1.8
3,134,008	-				-0.5
3,134,008	-				-0.8
3,134,011	+				+0.2
3,134,011	+				-2.5
3,134,017	-				-2.0
3,134,017	-				-2.8
3,134,040	+				-0.5
3,134,040	+				-1.8
3,134,040	+				+0.2
3,134,040	+				+1.2
3,134,041	-				+0.5
3,134,089	+				+0.1
3,134,090	-				-0.1
3,134,131	-				+1.1
3,134,149	+				+0.2
3,134,150	-				+1.4
3,134,155	+				-0.3
3,134,170	+				+1.3
3,134,190	+				+0.2
3,134,222	-				-0.7
3,134,222	-				+0.8
3,134,328	+				+2.1
3,134,329	-				-1.8
3,134,329	-				-0.5
3,134,333	-				+0.7
3,134,333	-				+0.8
3,134,333	-				-1.6
3,134,439	-		BT2510	0.10	-0.9
3,134,448	+		BT2510	0.11	+2.1
3,134,492	-		BT2510	0.15	-0.7
3,134,492	-		BT2510	0.15	-0.5
3,134,494	-		BT2510	0.16	+0.2
3,134,494	-		BT2510	0.16	-0.3
3,134,528	+		BT2510	0.19	-2.0
3,134,565	+		BT2510	0.23	-1.6
3,134,565	+		BT2510	0.23	-0.5
3,134,567	+		BT2510	0.23	-0.9
3,134,573	-		BT2510	0.24	-2.3
3,134,573	-		BT2510	0.24	-0.2
3,134,687	-		BT2510	0.35	-2.0
3,134,694	-		BT2510	0.36	-0.1
3,134,694	-		BT2510	0.36	-1.2
3,134,720	+		BT2510	0.38	-0.9
3,134,743	+		BT2510	0.41	-1.0
3,134,743	+		BT2510	0.41	-0.9
3,134,743	+		BT2510	0.41	+1.7
3,134,746	-		BT2510	0.41	-0.6
3,134,824	-		BT2510	0.49	-1.0
3,134,832	-		BT2510	0.49	-2.8
3,134,861	+		BT2510	0.52	+2.1
3,134,861	+		BT2510	0.52	-1.2
3,134,862	-		BT2510	0.52	-0.3
3,134,862	-		BT2510	0.52	-0.6
3,134,948	+		BT2510	0.61	-1.3
3,134,981	-		BT2510	0.64	-4.2
3,134,995	+		BT2510	0.66	-0.9
3,134,996	-		BT2510	0.66	-1.8
3,135,011	+		BT2510	0.67	+0.5
3,135,116	+		BT2510	0.78	-0.0
3,135,116	+		BT2510	0.78	-0.4
3,135,117	-		BT2510	0.78	-0.3
3,135,120	+		BT2510	0.78	-1.2
3,135,120	+		BT2510	0.78	+0.5
3,135,120	+		BT2510	0.78	+0.1
3,135,159	-		BT2510	0.82	-2.3
3,135,173	+		BT2510	0.83	-0.2
3,135,189	-				-1.3
3,135,192	+		BT2510	0.85	-1.1
3,135,193	-		BT2510	0.85	-0.9
3,135,193	-		BT2510	0.85	-1.5
3,135,243	+				-1.0
3,135,336	+				-2.8
3,135,352	+				+0.9
3,135,353	-				-1.4
3,135,357	+				-2.0
3,135,410	+				-2.2
3,135,472	-				-3.6
3,135,475	-				-1.9
3,135,489	-		BT2511	0.12	-0.5
3,135,527	+		BT2511	0.21	-0.2
3,135,628	+		BT2511	0.45	-3.1
3,135,629	-		BT2511	0.45	-2.4
3,135,654	+		BT2511	0.51	-0.2
3,135,659	+		BT2511	0.53	-1.0
3,135,660	-		BT2511	0.53	-0.2
3,135,660	-		BT2511	0.53	-1.3
3,135,663	+		BT2511	0.54	+0.2
3,135,702	+		BT2511	0.63	-0.7
3,135,703	-		BT2511	0.63	-1.3
3,135,703	-		BT2511	0.63	-1.3
3,135,704	+		BT2511	0.63	-0.0
3,135,705	-		BT2511	0.64	-0.4
3,135,705	-		BT2511	0.64	+1.1
3,135,713	+		BT2511	0.65	-3.0
3,135,870	+				-0.9
3,135,883	-				+0.5
3,135,889	-				+1.0
3,135,902	+				-1.5
3,135,903	-				-0.1
3,135,903	-				-1.7
3,135,951	-				-1.2
3,136,020	+				-0.5
3,136,109	+		BT2512	0.13	+1.2
3,136,126	-		BT2512	0.13	-1.5
3,136,126	-		BT2512	0.13	-2.0
3,136,143	-		BT2512	0.14	-1.8
3,136,146	+		BT2512	0.14	-2.2
3,136,146	+		BT2512	0.14	-0.1
3,136,147	-		BT2512	0.14	-0.6
3,136,151	+		BT2512	0.15	-1.4
3,136,214	+		BT2512	0.18	+0.4
3,136,214	+		BT2512	0.18	-0.5
3,136,215	-		BT2512	0.18	-0.5
3,136,304	+		BT2512	0.22	-1.3
3,136,305	-		BT2512	0.23	+0.3
3,136,313	+		BT2512	0.23	+0.6
3,136,314	-		BT2512	0.23	+1.4
3,136,314	-		BT2512	0.23	-2.7
3,136,332	+		BT2512	0.24	-0.4
3,136,336	-		BT2512	0.24	-0.5
3,136,336	-		BT2512	0.24	-3.2