Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2432

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
3,042,195	+		BT2431	0.37	-2.3
3,042,196	-		BT2431	0.37	-2.5
3,042,196	-		BT2431	0.37	-0.3
3,042,204	-		BT2431	0.38	-2.7
3,042,218	+		BT2431	0.39	-0.9
3,042,308	-		BT2431	0.45	-1.6
3,042,454	-		BT2431	0.55	-1.8
3,042,461	-		BT2431	0.56	-1.9
3,042,463	+		BT2431	0.56	-1.1
3,042,503	+		BT2431	0.59	-1.6
3,042,667	-		BT2431	0.70	-2.5
3,042,667	-		BT2431	0.70	+1.0
3,042,847	+		BT2431	0.83	+1.4
3,042,924	+		BT2431	0.88	-0.7
3,042,925	-		BT2431	0.88	-2.3
3,042,995	+				-2.5
3,042,996	-				-3.5
3,043,101	-				-0.8
3,043,102	+				+1.5
3,043,102	+				-1.8
3,043,103	-				-0.3
3,043,109	-				+1.2
3,043,153	+				-2.8
3,043,176	+				+1.3
3,043,184	-				-1.8
3,043,188	-				-1.5
3,043,233	-				+0.5
3,043,262	+				-0.6
3,043,284	+				-1.2
3,043,287	-				-1.5
3,043,367	+				-2.5
3,043,386	-				+0.8
3,043,433	+				-1.3
3,043,434	-				+2.5
3,043,434	-				-0.4
3,043,445	+				-2.1
3,043,460	+		BT2432	0.10	-0.5
3,043,573	-		BT2432	0.14	-0.6
3,043,604	+		BT2432	0.15	+1.1
3,043,604	+		BT2432	0.15	-2.5
3,043,604	+		BT2432	0.15	-1.1
3,043,604	+		BT2432	0.15	+0.1
3,043,604	+		BT2432	0.15	-0.5
3,043,604	+		BT2432	0.15	-2.1
3,043,604	+		BT2432	0.15	+0.3
3,043,605	-		BT2432	0.15	-0.3
3,043,636	+		BT2432	0.16	-1.4
3,043,682	+		BT2432	0.18	-0.9
3,043,716	+		BT2432	0.19	-2.8
3,043,789	-		BT2432	0.22	-1.2
3,043,816	+		BT2432	0.23	+1.7
3,043,816	+		BT2432	0.23	-1.6
3,043,817	-		BT2432	0.23	+1.2
3,043,973	-		BT2432	0.28	-1.6
3,043,982	+		BT2432	0.28	-2.2
3,044,054	+		BT2432	0.31	-1.1
3,044,067	-		BT2432	0.31	+1.0
3,044,093	+		BT2432	0.32	-1.3
3,044,114	+		BT2432	0.33	-0.1
3,044,115	-		BT2432	0.33	+0.2
3,044,200	+		BT2432	0.36	+1.5
3,044,225	-		BT2432	0.37	-0.2
3,044,250	+		BT2432	0.37	-0.5
3,044,293	+		BT2432	0.39	+0.1
3,044,304	-		BT2432	0.39	-1.2
3,044,322	+		BT2432	0.40	+1.4
3,044,323	-		BT2432	0.40	-1.8
3,044,323	-		BT2432	0.40	-0.8
3,044,352	-		BT2432	0.41	-0.8
3,044,368	+		BT2432	0.41	+0.5
3,044,368	+		BT2432	0.41	-3.5
3,044,504	+		BT2432	0.46	-1.3
3,044,505	-		BT2432	0.46	-1.0
3,044,524	-		BT2432	0.47	-0.8
3,044,550	-		BT2432	0.48	+1.5
3,044,555	+		BT2432	0.48	-0.9
3,044,555	+		BT2432	0.48	+0.9
3,044,597	+		BT2432	0.49	-1.2
3,044,598	-		BT2432	0.49	-1.4
3,044,680	+		BT2432	0.52	-2.8
3,044,681	-		BT2432	0.52	-1.1
3,044,711	+		BT2432	0.53	+0.8
3,044,721	+		BT2432	0.53	-0.8
3,044,760	-		BT2432	0.55	-3.2
3,044,760	-		BT2432	0.55	-1.1
3,044,771	+				+1.5
3,044,871	-		BT2432	0.59	-1.0
3,044,871	-		BT2432	0.59	-0.6
3,044,878	+		BT2432	0.59	-0.0
3,044,879	-		BT2432	0.59	+0.5
3,044,886	-		BT2432	0.59	-1.4
3,044,897	-		BT2432	0.59	-0.9
3,044,934	+		BT2432	0.61	-1.8
3,044,935	-		BT2432	0.61	+1.8
3,045,005	+		BT2432	0.63	-1.0
3,045,005	+		BT2432	0.63	-0.7
3,045,007	+		BT2432	0.63	+0.9
3,045,008	-		BT2432	0.63	-3.0
3,045,036	+		BT2432	0.64	-0.8
3,045,116	+		BT2432	0.67	-2.3
3,045,152	+		BT2432	0.68	-1.9
3,045,153	-		BT2432	0.68	-0.5
3,045,153	-		BT2432	0.68	-0.1
3,045,154	+		BT2432	0.68	-1.0
3,045,154	+		BT2432	0.68	+0.3
3,045,155	-		BT2432	0.68	+0.2
3,045,170	+		BT2432	0.69	-0.5
3,045,173	-		BT2432	0.69	-0.4
3,045,198	-		BT2432	0.70	+2.2
3,045,353	+		BT2432	0.75	-1.1
3,045,353	+		BT2432	0.75	-0.9
3,045,354	-		BT2432	0.75	-3.1
3,045,354	-		BT2432	0.75	-0.7
3,045,359	+		BT2432	0.75	-0.1
3,045,482	+		BT2432	0.79	-1.8
3,045,536	+		BT2432	0.81	-2.5
3,045,536	+		BT2432	0.81	-0.4
3,045,536	+		BT2432	0.81	+1.8
3,045,537	-		BT2432	0.81	-1.1
3,045,537	-		BT2432	0.81	-0.4
3,045,537	-		BT2432	0.81	-2.2
3,045,539	-		BT2432	0.81	-0.7
3,045,539	-		BT2432	0.81	+0.7
3,045,539	-		BT2432	0.81	-0.9
3,045,574	-		BT2432	0.83	-1.0
3,045,631	-		BT2432	0.84	-1.5
3,045,633	-		BT2432	0.85	-0.7
3,045,633	-		BT2432	0.85	-0.5
3,045,653	+		BT2432	0.85	-0.3
3,045,704	+		BT2432	0.87	-0.6
3,045,733	-		BT2432	0.88	-1.8
3,045,733	-		BT2432	0.88	-2.3
3,045,733	-		BT2432	0.88	+0.4
3,045,778	+		BT2432	0.90	-0.3
3,045,796	+				-1.5
3,045,861	+				-1.3
3,045,862	-				-0.4
3,045,866	-				-0.9
3,045,998	+				-1.5
3,046,051	-				-0.5
3,046,067	+				-1.7
3,046,068	-				+0.3
3,046,068	-				+0.8
3,046,079	+				-0.1
3,046,109	-				+1.3
3,046,109	-				-0.4
3,046,119	-				-0.9
3,046,140	+				-3.6
3,046,141	-				-1.5
3,046,142	+				-4.2
3,046,174	-				-0.4
3,046,193	+				-1.8
3,046,264	-				-0.6
3,046,322	-		BT2433	0.11	-1.6
3,046,325	-		BT2433	0.11	-0.8
3,046,325	-		BT2433	0.11	-1.0
3,046,341	+		BT2433	0.12	-3.6
3,046,342	-		BT2433	0.12	-0.4
3,046,342	-		BT2433	0.12	+0.6
3,046,349	-		BT2433	0.13	-2.6
3,046,567	+		BT2433	0.29	-2.1
3,046,615	-		BT2433	0.33	-3.7
3,046,684	+		BT2433	0.38	-1.3
3,046,685	-		BT2433	0.38	+0.1
3,046,724	+		BT2433	0.41	-0.9
3,046,725	-		BT2433	0.41	-2.9
3,046,725	-		BT2433	0.41	-1.2
3,046,725	-		BT2433	0.41	+1.4
3,046,727	-		BT2433	0.41	-2.2
3,046,727	-		BT2433	0.41	-1.1
3,046,747	+		BT2433	0.43	-4.0
3,046,748	-		BT2433	0.43	-0.8
3,046,807	+		BT2433	0.47	-0.3
3,046,873	+		BT2433	0.52	-1.9
3,046,874	-		BT2433	0.52	-2.6
3,046,957	+		BT2433	0.58	-2.8
3,046,958	-		BT2433	0.58	+0.3
3,046,958	-		BT2433	0.58	-1.9
3,046,961	-		BT2433	0.59	-0.7
3,046,963	-		BT2433	0.59	-0.4
3,046,963	-		BT2433	0.59	-1.3
3,046,967	+		BT2433	0.59	-0.2
3,046,982	+		BT2433	0.60	+0.5
3,047,056	+		BT2433	0.66	-1.6
3,047,056	+		BT2433	0.66	+1.9
3,047,057	-		BT2433	0.66	-1.1