Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1249

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
1,554,758	+		BT1248	0.39	+0.5
1,554,759	-		BT1248	0.40	+0.9
1,554,797	-		BT1248	0.42	-2.1
1,554,831	+		BT1248	0.44	-1.1
1,554,882	+		BT1248	0.47	-0.2
1,554,930	-		BT1248	0.50	-0.5
1,554,930	-		BT1248	0.50	-2.0
1,554,968	+		BT1248	0.53	-1.1
1,554,968	+		BT1248	0.53	+0.5
1,554,980	+		BT1248	0.53	-1.7
1,555,057	-		BT1248	0.58	-2.8
1,555,203	+		BT1248	0.67	-1.4
1,555,208	-		BT1248	0.68	-0.5
1,555,208	-		BT1248	0.68	+0.1
1,555,209	+				-0.5
1,555,210	-		BT1248	0.68	-1.7
1,555,278	-		BT1248	0.72	-0.6
1,555,284	+		BT1248	0.72	-2.4
1,555,296	+		BT1248	0.73	-1.9
1,555,508	-		BT1248	0.86	+0.2
1,555,520	+		BT1248	0.87	+1.7
1,555,554	+		BT1248	0.89	-0.7
1,555,566	-				-0.1
1,555,620	+				-2.1
1,555,651	+				-0.9
1,555,761	+				-2.4
1,555,797	+				-0.7
1,555,960	+		BT1249	0.22	+1.4
1,555,975	-		BT1249	0.24	-0.2
1,555,980	+		BT1249	0.24	+0.3
1,556,042	+		BT1249	0.30	+0.1
1,556,069	+		BT1249	0.33	-1.3
1,556,083	+		BT1249	0.34	-1.5
1,556,084	-		BT1249	0.34	+1.4
1,556,103	-		BT1249	0.36	-1.5
1,556,182	-		BT1249	0.44	-0.3
1,556,222	+		BT1249	0.48	-1.0
1,556,254	+		BT1249	0.51	-2.0
1,556,357	+		BT1249	0.61	-3.0
1,556,400	+		BT1249	0.65	-1.1
1,556,400	+		BT1249	0.65	-0.3
1,556,400	+		BT1249	0.65	+0.3
1,556,421	+		BT1249	0.67	-2.4
1,556,421	+		BT1249	0.67	-0.0
1,556,536	+		BT1249	0.78	-1.3
1,556,562	-		BT1249	0.81	+3.3
1,556,562	-		BT1249	0.81	+0.2
1,556,615	-		BT1249	0.86	-2.2
1,556,627	+		BT1249	0.87	-2.9
1,556,636	-		BT1249	0.88	+1.5
1,556,661	-				-0.1
1,556,664	+				+1.3
1,556,664	+				-0.2
1,556,685	+				+0.7
1,556,688	+				-1.4
1,556,803	-				-0.8
1,556,807	+				-1.6
1,556,808	-				-0.3
1,556,811	-				-0.3
1,556,847	+				+0.2
1,556,964	+		BT1250	0.12	-0.9
1,556,965	-		BT1250	0.12	-0.8
1,556,970	-		BT1250	0.12	+1.7
1,557,097	-		BT1250	0.22	-0.9
1,557,192	+		BT1250	0.29	-0.6
1,557,200	+		BT1250	0.30	+0.1
1,557,201	-		BT1250	0.30	-0.2
1,557,241	-		BT1250	0.33	-2.5
1,557,251	+		BT1250	0.33	+0.3
1,557,365	+		BT1250	0.42	+0.1
1,557,367	-		BT1250	0.42	-0.4
1,557,369	-		BT1250	0.42	-1.0
1,557,479	-		BT1250	0.51	-0.9
1,557,544	+				-0.5
1,557,631	+		BT1250	0.62	-2.0
1,557,631	+		BT1250	0.62	-0.1