Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0778 and BT0779 are separated by 272 nucleotides BT0779 and BT0780 are separated by 125 nucleotides BT0780 and BT0781 are separated by 4 nucleotides
BT0778: BT0778 - conserved hypothetical protein (NCBI ptt file), at 969,603 to 970,490
BT0778
BT0779: BT0779 - hypothetical protein (NCBI ptt file), at 970,763 to 971,086
BT0779
BT0780: BT0780 - acetyltransferase (NCBI ptt file), at 971,212 to 971,718
BT0780
BT0781: BT0781 - hypothetical protein (NCBI ptt file), at 971,723 to 972,445
BT0781
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.821 kb on - strand, within BT0778 at 970.019 kb on - strand, within BT0778 at 970.029 kb on - strand, within BT0778 at 970.044 kb on + strand, within BT0778 at 970.099 kb on - strand, within BT0778 at 970.109 kb on - strand, within BT0778 at 970.161 kb on - strand, within BT0778 at 970.208 kb on + strand, within BT0778 at 970.209 kb on - strand, within BT0778 at 970.216 kb on + strand, within BT0778 at 970.252 kb on - strand, within BT0778 at 970.499 kb on - strand at 970.513 kb on - strand at 970.513 kb on - strand at 970.517 kb on - strand at 970.521 kb on - strand at 970.521 kb on - strand at 970.630 kb on - strand at 970.709 kb on - strand at 970.714 kb on - strand at 970.803 kb on + strand, within BT0779 at 970.833 kb on + strand, within BT0779 at 970.885 kb on + strand, within BT0779 at 970.970 kb on + strand, within BT0779 at 971.011 kb on + strand, within BT0779 at 971.043 kb on + strand, within BT0779 at 971.044 kb on - strand, within BT0779 at 971.079 kb on + strand at 971.098 kb on + strand at 971.101 kb on + strand at 971.154 kb on - strand at 971.156 kb on + strand at 971.167 kb on + strand at 971.187 kb on - strand at 971.189 kb on - strand at 971.348 kb on + strand, within BT0780 at 971.351 kb on - strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.369 kb on - strand, within BT0780 at 971.380 kb on - strand, within BT0780 at 971.610 kb on - strand, within BT0780 at 971.672 kb on - strand at 971.718 kb on + strand at 971.809 kb on - strand, within BT0781 at 971.809 kb on - strand, within BT0781 at 971.819 kb on - strand, within BT0781 at 971.840 kb on - strand, within BT0781 at 971.851 kb on + strand, within BT0781 at 971.852 kb on - strand, within BT0781 at 971.865 kb on + strand, within BT0781 at 971.874 kb on - strand, within BT0781 at 971.874 kb on - strand, within BT0781 at 971.984 kb on - strand, within BT0781 at 971.996 kb on - strand, within BT0781 at 972.032 kb on + strand, within BT0781 at 972.033 kb on - strand, within BT0781
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 969,821 - BT0778 0.25 -2.6 970,019 - BT0778 0.47 -0.0 970,029 - BT0778 0.48 -1.8 970,044 + BT0778 0.50 -1.0 970,099 - BT0778 0.56 -2.0 970,109 - BT0778 0.57 +0.4 970,161 - BT0778 0.63 -1.3 970,208 + BT0778 0.68 +3.6 970,209 - BT0778 0.68 -0.6 970,216 + BT0778 0.69 +0.2 970,252 - BT0778 0.73 -1.1 970,499 - -1.4 970,513 - +0.9 970,513 - +2.3 970,517 - -1.0 970,521 - -2.3 970,521 - -0.0 970,630 - -0.8 970,709 - +0.2 970,714 - -0.5 970,803 + BT0779 0.12 -1.6 970,833 + BT0779 0.22 -2.4 970,885 + BT0779 0.38 -2.1 970,970 + BT0779 0.64 -1.4 971,011 + BT0779 0.77 -2.1 971,043 + BT0779 0.86 -1.4 971,044 - BT0779 0.87 -1.7 971,079 + -2.2 971,098 + -2.8 971,101 + +0.8 971,154 - -2.6 971,156 + +0.1 971,167 + -2.4 971,187 - -0.7 971,189 - -0.0 971,348 + BT0780 0.27 -1.3 971,351 - BT0780 0.27 -2.3 971,368 + BT0780 0.31 -1.6 971,368 + BT0780 0.31 -1.1 971,369 - BT0780 0.31 +1.1 971,380 - BT0780 0.33 -2.8 971,610 - BT0780 0.79 -0.1 971,672 - -2.3 971,718 + +0.4 971,809 - BT0781 0.12 -1.5 971,809 - BT0781 0.12 +1.1 971,819 - BT0781 0.13 -1.9 971,840 - BT0781 0.16 -1.6 971,851 + BT0781 0.18 -1.2 971,852 - BT0781 0.18 -1.5 971,865 + BT0781 0.20 +1.0 971,874 - BT0781 0.21 +0.2 971,874 - BT0781 0.21 -1.9 971,984 - BT0781 0.36 -1.8 971,996 - BT0781 0.38 -0.3 972,032 + BT0781 0.43 +1.9 972,033 - BT0781 0.43 -1.3
Or see this region's nucleotide sequence