Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0564 and BT0565 are separated by 103 nucleotides BT0565 and BT0566 are separated by 336 nucleotides BT0566 and BT0567 are separated by 35 nucleotides BT0567 and BT0568 overlap by 4 nucleotides
BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724
BT0564
BT0565: BT0565 - putative heat shock protein (NCBI ptt file), at 701,828 to 702,187
BT0565
BT0566: BT0566 - alanyl-tRNA synthetase (NCBI ptt file), at 702,524 to 703,000
BT0566
BT0567: BT0567 - putative protein involved in barrier function of the cell envelope (NCBI ptt file), at 703,036 to 703,680
BT0567
BT0568: BT0568 - hypothetical protein (NCBI ptt file), at 703,677 to 704,345
BT0568
Position (kb) 702
703
704 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 701.542 kb on - strand, within BT0564 at 701.570 kb on - strand, within BT0564 at 701.612 kb on + strand, within BT0564 at 701.614 kb on + strand at 701.614 kb on + strand at 701.689 kb on - strand at 701.762 kb on + strand at 702.053 kb on - strand, within BT0565 at 702.257 kb on - strand at 702.270 kb on + strand at 702.385 kb on - strand at 702.580 kb on - strand, within BT0566 at 702.626 kb on + strand, within BT0566 at 702.626 kb on + strand, within BT0566 at 702.627 kb on - strand, within BT0566 at 702.627 kb on - strand, within BT0566 at 702.632 kb on + strand, within BT0566 at 702.633 kb on - strand, within BT0566 at 702.638 kb on + strand, within BT0566 at 702.639 kb on - strand, within BT0566 at 702.731 kb on - strand, within BT0566 at 702.791 kb on + strand, within BT0566 at 702.797 kb on - strand, within BT0566 at 702.845 kb on - strand, within BT0566 at 702.847 kb on - strand, within BT0566 at 702.873 kb on - strand, within BT0566 at 702.874 kb on + strand, within BT0566 at 702.916 kb on + strand, within BT0566 at 702.943 kb on + strand, within BT0566 at 702.944 kb on - strand, within BT0566 at 702.949 kb on + strand, within BT0566 at 702.950 kb on - strand, within BT0566 at 702.950 kb on - strand, within BT0566 at 703.037 kb on + strand at 703.086 kb on + strand at 703.086 kb on + strand at 703.087 kb on - strand at 703.087 kb on - strand at 703.127 kb on - strand, within BT0567 at 703.166 kb on - strand, within BT0567 at 703.277 kb on - strand, within BT0567 at 703.395 kb on - strand, within BT0567 at 703.428 kb on + strand, within BT0567 at 703.541 kb on - strand, within BT0567 at 703.558 kb on - strand, within BT0567 at 703.574 kb on + strand, within BT0567 at 703.617 kb on + strand at 703.648 kb on + strand at 703.649 kb on - strand at 703.661 kb on + strand at 703.747 kb on + strand, within BT0568 at 703.761 kb on - strand, within BT0568 at 703.784 kb on + strand, within BT0568 at 703.842 kb on + strand, within BT0568 at 703.901 kb on + strand, within BT0568 at 703.914 kb on - strand, within BT0568 at 703.916 kb on + strand, within BT0568 at 703.995 kb on - strand, within BT0568 at 703.998 kb on - strand, within BT0568
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 701,542 - BT0564 0.84 +0.1 701,570 - BT0564 0.86 +0.2 701,612 + BT0564 0.90 -0.5 701,614 + -3.8 701,614 + +1.0 701,689 - -1.5 701,762 + -0.9 702,053 - BT0565 0.62 +1.0 702,257 - +0.7 702,270 + -0.2 702,385 - -1.3 702,580 - BT0566 0.12 +1.1 702,626 + BT0566 0.21 -0.3 702,626 + BT0566 0.21 +0.4 702,627 - BT0566 0.22 -0.1 702,627 - BT0566 0.22 +0.4 702,632 + BT0566 0.23 -0.6 702,633 - BT0566 0.23 +0.9 702,638 + BT0566 0.24 +0.9 702,639 - BT0566 0.24 -0.5 702,731 - BT0566 0.43 +1.5 702,791 + BT0566 0.56 -0.2 702,797 - BT0566 0.57 -0.5 702,845 - BT0566 0.67 +1.8 702,847 - BT0566 0.68 +0.8 702,873 - BT0566 0.73 -0.9 702,874 + BT0566 0.73 +1.4 702,916 + BT0566 0.82 +1.5 702,943 + BT0566 0.88 +0.8 702,944 - BT0566 0.88 -1.1 702,949 + BT0566 0.89 -0.6 702,950 - BT0566 0.89 +0.2 702,950 - BT0566 0.89 -1.9 703,037 + -0.6 703,086 + -1.5 703,086 + -0.3 703,087 - -1.0 703,087 - -0.2 703,127 - BT0567 0.14 -1.1 703,166 - BT0567 0.20 +0.5 703,277 - BT0567 0.37 +2.6 703,395 - BT0567 0.56 +0.2 703,428 + BT0567 0.61 -0.9 703,541 - BT0567 0.78 -1.5 703,558 - BT0567 0.81 -0.7 703,574 + BT0567 0.83 +0.8 703,617 + +1.0 703,648 + -0.7 703,649 - -2.2 703,661 + -0.8 703,747 + BT0568 0.10 +0.1 703,761 - BT0568 0.13 -1.6 703,784 + BT0568 0.16 -1.8 703,842 + BT0568 0.25 -1.6 703,901 + BT0568 0.33 -2.8 703,914 - BT0568 0.35 -1.7 703,916 + BT0568 0.36 +0.8 703,995 - BT0568 0.48 -1.9 703,998 - BT0568 0.48 -0.5
Or see this region's nucleotide sequence