Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0508 and BT0509 overlap by 4 nucleotides BT0509 and BT0510 are separated by 321 nucleotides
BT0508: BT0508 - ABC transporter ATP-binding protein (NCBI ptt file), at 629,904 to 631,733
BT0508
BT0509: BT0509 - ABC transporter ATP-binding/transmembrane protein (NCBI ptt file), at 631,730 to 633,460
BT0509
BT0510: BT0510 - putative heme biosynthesis protein (NCBI ptt file), at 633,782 to 634,882
BT0510
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 630.737 kb on - strand, within BT0508 at 631.257 kb on - strand, within BT0508 at 631.548 kb on - strand, within BT0508 at 631.588 kb on + strand at 631.615 kb on + strand at 631.657 kb on + strand at 631.658 kb on - strand at 631.662 kb on - strand at 631.662 kb on - strand at 631.681 kb on - strand at 631.683 kb on - strand at 631.848 kb on + strand at 631.922 kb on - strand, within BT0509 at 631.936 kb on + strand, within BT0509 at 631.994 kb on + strand, within BT0509 at 632.042 kb on - strand, within BT0509 at 632.110 kb on + strand, within BT0509 at 632.131 kb on - strand, within BT0509 at 632.232 kb on + strand, within BT0509 at 632.416 kb on + strand, within BT0509 at 632.417 kb on - strand, within BT0509 at 632.642 kb on + strand, within BT0509 at 632.665 kb on + strand, within BT0509 at 632.672 kb on - strand, within BT0509 at 632.672 kb on - strand, within BT0509 at 632.745 kb on + strand, within BT0509 at 632.746 kb on - strand, within BT0509 at 632.876 kb on + strand, within BT0509 at 632.877 kb on - strand, within BT0509 at 632.978 kb on + strand, within BT0509 at 632.979 kb on - strand, within BT0509 at 633.104 kb on + strand, within BT0509 at 633.105 kb on - strand, within BT0509 at 633.110 kb on - strand, within BT0509 at 633.246 kb on + strand, within BT0509 at 633.428 kb on - strand at 633.545 kb on + strand at 633.545 kb on + strand at 633.552 kb on + strand at 633.567 kb on + strand at 633.567 kb on + strand at 633.674 kb on - strand at 633.698 kb on + strand at 633.762 kb on - strand at 633.831 kb on - strand at 633.850 kb on + strand at 633.962 kb on + strand, within BT0510 at 633.962 kb on + strand, within BT0510 at 633.988 kb on + strand, within BT0510 at 634.091 kb on - strand, within BT0510 at 634.097 kb on + strand, within BT0510 at 634.111 kb on - strand, within BT0510 at 634.262 kb on + strand, within BT0510 at 634.263 kb on - strand, within BT0510 at 634.291 kb on + strand, within BT0510 at 634.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 630,737 - BT0508 0.46 -0.4 631,257 - BT0508 0.74 +1.0 631,548 - BT0508 0.90 +2.4 631,588 + -1.4 631,615 + -2.9 631,657 + -0.0 631,658 - -0.7 631,662 - -0.4 631,662 - -0.3 631,681 - -1.6 631,683 - -2.9 631,848 + +1.0 631,922 - BT0509 0.11 -0.5 631,936 + BT0509 0.12 -0.0 631,994 + BT0509 0.15 -2.3 632,042 - BT0509 0.18 +0.6 632,110 + BT0509 0.22 -0.0 632,131 - BT0509 0.23 +1.0 632,232 + BT0509 0.29 -0.6 632,416 + BT0509 0.40 -0.5 632,417 - BT0509 0.40 -1.1 632,642 + BT0509 0.53 +0.1 632,665 + BT0509 0.54 -1.0 632,672 - BT0509 0.54 +2.4 632,672 - BT0509 0.54 -1.0 632,745 + BT0509 0.59 -0.3 632,746 - BT0509 0.59 -0.6 632,876 + BT0509 0.66 +0.3 632,877 - BT0509 0.66 -0.3 632,978 + BT0509 0.72 -2.6 632,979 - BT0509 0.72 +1.1 633,104 + BT0509 0.79 -0.7 633,105 - BT0509 0.79 +0.4 633,110 - BT0509 0.80 -3.4 633,246 + BT0509 0.88 -0.9 633,428 - -1.2 633,545 + -0.4 633,545 + -0.7 633,552 + -1.2 633,567 + -1.6 633,567 + -0.0 633,674 - -1.1 633,698 + -2.9 633,762 - -1.3 633,831 - +1.3 633,850 + -0.8 633,962 + BT0510 0.16 -0.8 633,962 + BT0510 0.16 +0.6 633,988 + BT0510 0.19 -0.0 634,091 - BT0510 0.28 -0.5 634,097 + BT0510 0.29 -0.1 634,111 - BT0510 0.30 +0.3 634,262 + BT0510 0.44 -1.2 634,263 - BT0510 0.44 +0.2 634,291 + BT0510 0.46 -0.3 634,373 - -0.7
Or see this region's nucleotide sequence