Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0305 and BT0306 overlap by 1 nucleotides BT0306 and BT0307 are separated by 128 nucleotides
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
BT0307: BT0307 - phosphofructokinase (NCBI ptt file), at 368,717 to 370,363
BT0307
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.219 kb on + strand, within BT0305 at 366.394 kb on + strand, within BT0305 at 366.395 kb on - strand, within BT0305 at 366.401 kb on + strand, within BT0305 at 366.406 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.487 kb on - strand, within BT0305 at 366.556 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.887 kb on + strand, within BT0305 at 367.180 kb on - strand at 367.231 kb on + strand at 367.232 kb on - strand at 367.235 kb on + strand at 367.236 kb on - strand at 367.241 kb on + strand at 367.291 kb on - strand at 367.313 kb on - strand at 367.405 kb on + strand, within BT0306 at 367.433 kb on + strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306 at 368.228 kb on + strand, within BT0306 at 368.229 kb on - strand, within BT0306 at 368.231 kb on - strand, within BT0306 at 368.281 kb on - strand, within BT0306 at 368.293 kb on + strand, within BT0306 at 368.439 kb on + strand, within BT0306 at 368.440 kb on - strand, within BT0306 at 368.460 kb on + strand at 368.556 kb on + strand at 368.586 kb on + strand at 368.599 kb on + strand at 368.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml remove 366,219 + BT0305 0.68 -2.5 366,394 + BT0305 0.74 -2.1 366,395 - BT0305 0.74 +0.3 366,401 + BT0305 0.74 +0.0 366,406 - BT0305 0.74 +0.7 366,481 - BT0305 0.76 -0.5 366,481 - BT0305 0.76 -2.1 366,481 - BT0305 0.76 -1.4 366,481 - BT0305 0.76 -1.7 366,487 - BT0305 0.77 -0.7 366,556 - BT0305 0.79 -1.0 366,795 - BT0305 0.86 -2.0 366,795 - BT0305 0.86 -0.7 366,887 + BT0305 0.89 -0.8 367,180 - -2.7 367,231 + -2.8 367,232 - -1.2 367,235 + -0.8 367,236 - -0.1 367,241 + -1.1 367,291 - -0.3 367,313 - +0.3 367,405 + BT0306 0.14 +0.3 367,433 + BT0306 0.16 -1.7 367,729 - BT0306 0.37 +0.5 367,729 - BT0306 0.37 +0.6 367,732 - BT0306 0.38 -1.8 367,780 + BT0306 0.41 -0.0 367,852 - BT0306 0.46 -0.8 367,868 - BT0306 0.48 +1.5 368,060 - BT0306 0.61 +1.8 368,228 + BT0306 0.74 -2.2 368,229 - BT0306 0.74 -2.0 368,231 - BT0306 0.74 -1.2 368,281 - BT0306 0.78 +0.3 368,293 + BT0306 0.78 +0.2 368,439 + BT0306 0.89 +1.5 368,440 - BT0306 0.89 +0.8 368,460 + -1.6 368,556 + +0.5 368,586 + +0.9 368,599 + +0.6 368,600 - +0.6
Or see this region's nucleotide sequence