Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0305

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0304 and BT0305 are separated by 3 nucleotidesBT0305 and BT0306 overlap by 1 nucleotides BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107 BT0304 BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215 BT0305 BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588 BT0306 Position (kb) 364 365 366 367 368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 363.277 kb on - strand, within BT0304at 363.290 kb on - strand, within BT0304at 363.341 kb on - strand, within BT0304at 363.442 kb on - strand, within BT0304at 363.505 kb on - strand, within BT0304at 363.509 kb on + strand, within BT0304at 363.630 kb on - strand, within BT0304at 363.649 kb on - strand, within BT0304at 363.775 kb on - strand, within BT0304at 363.861 kb on + strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.867 kb on + strand, within BT0304at 363.877 kb on - strand, within BT0304at 363.886 kb on - strand, within BT0304at 363.903 kb on + strand, within BT0304at 364.130 kb on + strandat 364.343 kb on - strandat 364.343 kb on - strandat 364.401 kb on - strandat 364.491 kb on + strand, within BT0305at 364.524 kb on - strand, within BT0305at 364.546 kb on - strand, within BT0305at 364.650 kb on + strand, within BT0305at 364.660 kb on + strand, within BT0305at 364.661 kb on - strand, within BT0305at 364.665 kb on + strand, within BT0305at 364.770 kb on - strand, within BT0305at 364.988 kb on - strand, within BT0305at 364.988 kb on - strand, within BT0305at 365.019 kb on - strand, within BT0305at 365.108 kb on - strand, within BT0305at 365.136 kb on + strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.286 kb on + strand, within BT0305at 365.368 kb on - strand, within BT0305at 365.370 kb on + strand, within BT0305at 365.395 kb on + strand, within BT0305at 365.532 kb on + strand, within BT0305at 365.681 kb on - strand, within BT0305at 365.754 kb on + strand, within BT0305at 365.817 kb on + strand, within BT0305at 365.891 kb on - strand, within BT0305at 365.911 kb on - strand, within BT0305at 366.082 kb on + strand, within BT0305at 366.090 kb on + strand, within BT0305at 366.202 kb on + strand, within BT0305at 366.219 kb on + strand, within BT0305at 366.394 kb on + strand, within BT0305at 366.395 kb on - strand, within BT0305at 366.401 kb on + strand, within BT0305at 366.406 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.487 kb on - strand, within BT0305at 366.556 kb on - strand, within BT0305at 366.795 kb on - strand, within BT0305at 366.795 kb on - strand, within BT0305at 366.887 kb on + strand, within BT0305at 367.180 kb on - strandat 367.231 kb on + strandat 367.232 kb on - strandat 367.235 kb on + strandat 367.236 kb on - strandat 367.241 kb on + strandat 367.291 kb on - strandat 367.313 kb on - strandat 367.405 kb on + strand, within BT0306at 367.433 kb on + strand, within BT0306at 367.729 kb on - strand, within BT0306at 367.729 kb on - strand, within BT0306at 367.732 kb on - strand, within BT0306at 367.780 kb on + strand, within BT0306at 367.852 kb on - strand, within BT0306at 367.868 kb on - strand, within BT0306at 368.060 kb on - strand, within BT0306

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
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363,277 - BT0304 0.33 -0.2
363,290 - BT0304 0.34 +1.5
363,341 - BT0304 0.38 -0.0
363,442 - BT0304 0.46 +0.7
363,505 - BT0304 0.51 -0.1
363,509 + BT0304 0.52 +0.7
363,630 - BT0304 0.61 -0.8
363,649 - BT0304 0.63 -1.5
363,775 - BT0304 0.73 +0.2
363,861 + BT0304 0.80 -0.8
363,862 - BT0304 0.80 -0.8
363,862 - BT0304 0.80 -1.0
363,862 - BT0304 0.80 -1.8
363,867 + BT0304 0.81 -0.5
363,877 - BT0304 0.81 +0.0
363,886 - BT0304 0.82 -1.3
363,903 + BT0304 0.83 -3.0
364,130 + -0.2
364,343 - -1.0
364,343 - +1.0
364,401 - -0.7
364,491 + BT0305 0.12 -0.2
364,524 - BT0305 0.13 -0.6
364,546 - BT0305 0.14 -0.8
364,650 + BT0305 0.17 +0.2
364,660 + BT0305 0.18 -1.6
364,661 - BT0305 0.18 -1.8
364,665 + BT0305 0.18 -0.3
364,770 - BT0305 0.21 +0.7
364,988 - BT0305 0.28 -1.7
364,988 - BT0305 0.28 +1.9
365,019 - BT0305 0.29 -2.8
365,108 - BT0305 0.32 -0.2
365,136 + BT0305 0.33 -0.8
365,233 - BT0305 0.36 +2.2
365,233 - BT0305 0.36 -0.4
365,233 - BT0305 0.36 -3.8
365,286 + BT0305 0.38 +1.5
365,368 - BT0305 0.40 -0.2
365,370 + BT0305 0.41 -3.9
365,395 + BT0305 0.41 +0.1
365,532 + BT0305 0.46 -2.0
365,681 - BT0305 0.51 -1.6
365,754 + BT0305 0.53 -1.3
365,817 + BT0305 0.55 -1.1
365,891 - BT0305 0.57 +1.5
365,911 - BT0305 0.58 -0.1
366,082 + BT0305 0.63 +0.2
366,090 + BT0305 0.64 +0.7
366,202 + BT0305 0.67 +0.9
366,219 + BT0305 0.68 -2.5
366,394 + BT0305 0.74 -2.1
366,395 - BT0305 0.74 +0.3
366,401 + BT0305 0.74 +0.0
366,406 - BT0305 0.74 +0.7
366,481 - BT0305 0.76 -0.5
366,481 - BT0305 0.76 -2.1
366,481 - BT0305 0.76 -1.4
366,481 - BT0305 0.76 -1.7
366,487 - BT0305 0.77 -0.7
366,556 - BT0305 0.79 -1.0
366,795 - BT0305 0.86 -2.0
366,795 - BT0305 0.86 -0.7
366,887 + BT0305 0.89 -0.8
367,180 - -2.7
367,231 + -2.8
367,232 - -1.2
367,235 + -0.8
367,236 - -0.1
367,241 + -1.1
367,291 - -0.3
367,313 - +0.3
367,405 + BT0306 0.14 +0.3
367,433 + BT0306 0.16 -1.7
367,729 - BT0306 0.37 +0.5
367,729 - BT0306 0.37 +0.6
367,732 - BT0306 0.38 -1.8
367,780 + BT0306 0.41 -0.0
367,852 - BT0306 0.46 -0.8
367,868 - BT0306 0.48 +1.5
368,060 - BT0306 0.61 +1.8

Or see this region's nucleotide sequence