Experiment: RCH2_defined_glucose_5mM with Cinnamic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000402 and ABIE53_000403 are separated by 139 nucleotides ABIE53_000403 and ABIE53_000404 overlap by 4 nucleotides
ABIE53_000402: ABIE53_000402 - penicillin-binding protein 2, at 433,062 to 435,581
_000402
ABIE53_000403: ABIE53_000403 - rod shape-determining protein MreD, at 435,721 to 436,233
_000403
ABIE53_000404: ABIE53_000404 - rod shape-determining protein MreC, at 436,230 to 437,354
_000404
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.722 kb on + strand at 435.723 kb on - strand at 435.828 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 436.218 kb on - strand at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Cinnamic 5 mM remove 435,686 - +2.2 435,686 - +0.5 435,686 - -2.3 435,686 - +0.0 435,686 - +0.8 435,686 - +1.0 435,686 - +0.2 435,686 - +0.5 435,722 + +3.4 435,723 - -0.9 435,828 - ABIE53_000403 0.21 -2.6 435,881 - ABIE53_000403 0.31 -2.2 435,881 - ABIE53_000403 0.31 -1.2 435,881 - ABIE53_000403 0.31 -1.8 435,881 - ABIE53_000403 0.31 -3.3 435,881 - ABIE53_000403 0.31 -2.6 436,218 - -1.9 436,353 - ABIE53_000404 0.11 -0.9 436,353 - ABIE53_000404 0.11 -0.5 436,353 - ABIE53_000404 0.11 +1.4 436,353 - ABIE53_000404 0.11 -1.2 436,353 - ABIE53_000404 0.11 +0.3 436,353 - ABIE53_000404 0.11 +0.4 436,532 - ABIE53_000404 0.27 +0.1 436,532 - ABIE53_000404 0.27 -0.6 436,532 - ABIE53_000404 0.27 -1.6 436,532 - ABIE53_000404 0.27 -0.8 436,532 - ABIE53_000404 0.27 -0.2 436,532 - ABIE53_000404 0.27 -0.9 436,532 - ABIE53_000404 0.27 -1.0 436,532 - ABIE53_000404 0.27 +0.6 436,532 - ABIE53_000404 0.27 -0.3 436,532 - ABIE53_000404 0.27 -1.3 436,532 - ABIE53_000404 0.27 -0.3 436,532 - ABIE53_000404 0.27 -3.4 436,532 - ABIE53_000404 0.27 -1.3
Or see this region's nucleotide sequence