Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3213

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT3211 and BT3212 are separated by 12 nucleotidesBT3212 and BT3213 are separated by 52 nucleotidesBT3213 and BT3214 are separated by 17 nucleotides BT3211: BT3211 - conserved hypothetical protein (NCBI ptt file), at 4,104,738 to 4,104,971 BT3211 BT3212: BT3212 - putative bacitracin resistance protein (NCBI ptt file), at 4,104,984 to 4,105,778 BT3212 BT3213: BT3213 - tRNA pseudouridine synthase B (NCBI ptt file), at 4,105,831 to 4,106,553 BT3213 BT3214: BT3214 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file), at 4,106,571 to 4,107,629 BT3214 Position (kb) 4105 4106 4107Strain fitness (log2 ratio) -1 0 1at 4104.936 kb on + strand, within BT3211at 4104.936 kb on + strand, within BT3211at 4104.950 kb on + strandat 4105.793 kb on + strandat 4105.898 kb on + strandat 4105.952 kb on + strand, within BT3213at 4106.306 kb on + strand, within BT3213at 4106.306 kb on + strand, within BT3213at 4106.380 kb on + strand, within BT3213at 4106.556 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml
remove
4,104,936 + BT3211 0.85 -1.3
4,104,936 + BT3211 0.85 +0.0
4,104,950 + +0.2
4,105,793 + -1.7
4,105,898 + +0.2
4,105,952 + BT3213 0.17 +1.3
4,106,306 + BT3213 0.66 -0.3
4,106,306 + BT3213 0.66 +0.7
4,106,380 + BT3213 0.76 +0.1
4,106,556 + -0.3

Or see this region's nucleotide sequence