Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2129

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml
2,679,922	-		BT2128	0.79	-0.9
2,679,943	-		BT2128	0.79	+0.9
2,679,943	-		BT2128	0.79	-1.6
2,679,967	-		BT2128	0.80	-0.0
2,680,005	-		BT2128	0.81	+0.7
2,680,123	+		BT2128	0.85	-0.6
2,680,125	+		BT2128	0.85	+2.0
2,680,140	+		BT2128	0.86	+1.6
2,680,158	-		BT2128	0.87	-0.9
2,680,203	+		BT2128	0.88	-0.3
2,680,208	+		BT2128	0.88	-1.2
2,680,209	-		BT2128	0.88	+1.1
2,680,209	-		BT2128	0.88	-2.0
2,680,353	+				-0.0
2,680,382	+				+0.1
2,680,382	+				-0.0
2,680,421	+				+1.2
2,680,422	-				-1.1
2,680,423	+				-1.4
2,680,423	+				-0.9
2,680,424	-				-0.7
2,680,425	+				-0.8
2,680,489	-				-0.2
2,680,552	+				-0.6
2,680,567	-				-1.6
2,680,569	-				+0.9
2,680,588	+				+0.7
2,680,715	-				-3.6
2,680,738	-				-1.2
2,680,764	+				-0.2
2,680,909	-				-0.7
2,680,915	+				-2.9
2,681,091	+		BT2129	0.18	-1.2
2,681,093	+		BT2129	0.18	-3.5
2,681,214	+		BT2129	0.29	-1.4
2,681,218	+		BT2129	0.30	-1.7
2,681,219	-		BT2129	0.30	-1.2
2,681,327	+		BT2129	0.40	-1.0
2,681,349	-		BT2129	0.42	-5.5
2,681,355	+		BT2129	0.43	-2.5
2,681,356	-		BT2129	0.43	-4.9
2,681,356	-		BT2129	0.43	-1.7
2,681,359	+		BT2129	0.43	-2.7
2,681,360	-		BT2129	0.43	-2.0
2,681,383	+		BT2129	0.46	-1.7
2,681,391	-		BT2129	0.46	-0.0
2,681,391	-		BT2129	0.46	-3.4
2,681,401	+		BT2129	0.47	-0.0
2,681,518	+		BT2129	0.59	-5.2
2,681,533	-		BT2129	0.60	-2.1
2,681,594	-		BT2129	0.66	-1.2
2,681,667	-		BT2129	0.73	-4.0
2,681,811	+		BT2129	0.87	-1.7
2,681,811	+		BT2129	0.87	-3.9
2,681,811	+		BT2129	0.87	-0.4
2,681,811	+		BT2129	0.87	-0.4
2,681,844	+				-4.4
2,681,845	-				-2.0
2,681,845	-				-2.0
2,681,845	-				-1.7
2,681,851	+				-2.9
2,681,934	-				-2.2
2,681,934	-				-4.5
2,681,940	+				-1.0
2,681,944	+				-0.1
2,681,951	+				+1.3
2,681,951	+				-0.6
2,681,952	-				-0.4
2,681,966	-				+0.7
2,682,083	+		BT2130	0.20	-0.1
2,682,131	-		BT2130	0.27	-1.0
2,682,253	+		BT2130	0.45	-0.4
2,682,253	+		BT2130	0.45	-0.2
2,682,254	-		BT2130	0.46	+1.4
2,682,257	+		BT2130	0.46	-0.2
2,682,257	+		BT2130	0.46	-2.0
2,682,258	-		BT2130	0.46	+0.9
2,682,308	-		BT2130	0.54	+0.6
2,682,311	-		BT2130	0.54	-1.4
2,682,450	+		BT2130	0.75	-0.3
2,682,450	+		BT2130	0.75	-1.1
2,682,500	+		BT2130	0.83	-1.1
2,682,500	+		BT2130	0.83	-0.7
2,682,531	+		BT2130	0.87	-1.3
2,682,532	-		BT2130	0.87	-0.2
2,682,532	-		BT2130	0.87	+0.1
2,682,604	+				+1.1
2,682,605	-				+0.2
2,682,676	+				+1.1
2,682,677	-				-0.0
2,682,679	+				-2.1
2,682,717	-				-0.9
2,682,724	+				-0.7
2,682,725	-				-0.8
2,682,725	-				+0.8
2,682,725	-				-0.3
2,682,727	+				-1.5
2,682,754	+				-0.8
2,682,783	+				-0.7
2,682,783	+				+0.8
2,682,784	-				-2.1
2,682,827	-				-0.2
2,682,874	+				+0.7
2,682,875	-				-0.5
2,682,875	-				-2.2
2,682,890	+				-0.8
2,682,911	-				-0.9
2,682,921	-				-0.2