Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0737 and BT0738 are separated by 386 nucleotides BT0738 and BT0739 are separated by 220 nucleotides BT0739 and BT0740 are separated by 16 nucleotides
BT0737: BT0737 - formate--tetrahydrofolate ligase (NCBI ptt file), at 914,067 to 915,734
BT0737
BT0738: BT0738 - serine hydroxymethyltransferase (NCBI ptt file), at 916,121 to 917,401
BT0738
BT0739: BT0739 - hypothetical protein (NCBI ptt file), at 917,622 to 918,359
BT0739
BT0740: BT0740 - flavoredoxin (NCBI ptt file), at 918,376 to 918,915
BT0740
Position (kb) 916
917
918 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 915.146 kb on + strand, within BT0737 at 915.159 kb on - strand, within BT0737 at 915.270 kb on + strand, within BT0737 at 915.338 kb on + strand, within BT0737 at 915.381 kb on - strand, within BT0737 at 915.537 kb on + strand, within BT0737 at 915.538 kb on - strand, within BT0737 at 915.602 kb on + strand at 915.605 kb on - strand at 915.659 kb on + strand at 915.660 kb on - strand at 915.784 kb on - strand at 915.834 kb on - strand at 915.838 kb on - strand at 915.849 kb on + strand at 915.880 kb on + strand at 915.911 kb on - strand at 915.913 kb on - strand at 915.966 kb on + strand at 916.032 kb on + strand at 916.080 kb on - strand at 916.173 kb on - strand at 916.282 kb on + strand, within BT0738 at 916.387 kb on + strand, within BT0738 at 916.388 kb on - strand, within BT0738 at 916.388 kb on - strand, within BT0738 at 916.580 kb on + strand, within BT0738 at 916.581 kb on - strand, within BT0738 at 916.605 kb on - strand, within BT0738 at 916.738 kb on + strand, within BT0738 at 916.738 kb on + strand, within BT0738 at 917.008 kb on - strand, within BT0738 at 917.038 kb on + strand, within BT0738 at 917.263 kb on - strand, within BT0738 at 917.269 kb on + strand, within BT0738 at 917.447 kb on + strand at 917.739 kb on - strand, within BT0739 at 917.922 kb on - strand, within BT0739 at 918.011 kb on - strand, within BT0739 at 918.080 kb on - strand, within BT0739 at 918.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml remove 915,146 + BT0737 0.65 -0.0 915,159 - BT0737 0.65 +0.8 915,270 + BT0737 0.72 -1.4 915,338 + BT0737 0.76 -0.9 915,381 - BT0737 0.79 +0.2 915,537 + BT0737 0.88 -1.0 915,538 - BT0737 0.88 +1.6 915,602 + -0.6 915,605 - +0.2 915,659 + -0.4 915,660 - +1.1 915,784 - +1.1 915,834 - -0.0 915,838 - -1.6 915,849 + +1.8 915,880 + -0.8 915,911 - -0.9 915,913 - -1.0 915,966 + +0.4 916,032 + -0.4 916,080 - -1.4 916,173 - -3.9 916,282 + BT0738 0.13 -2.1 916,387 + BT0738 0.21 -1.2 916,388 - BT0738 0.21 -2.0 916,388 - BT0738 0.21 -5.2 916,580 + BT0738 0.36 -3.0 916,581 - BT0738 0.36 -3.3 916,605 - BT0738 0.38 -2.2 916,738 + BT0738 0.48 -2.8 916,738 + BT0738 0.48 -2.6 917,008 - BT0738 0.69 -1.9 917,038 + BT0738 0.72 -1.6 917,263 - BT0738 0.89 -2.7 917,269 + BT0738 0.90 -0.8 917,447 + -4.3 917,739 - BT0739 0.16 +1.1 917,922 - BT0739 0.41 -0.4 918,011 - BT0739 0.53 +1.6 918,080 - BT0739 0.62 -0.9 918,354 - +0.5
Or see this region's nucleotide sequence