Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22480

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22475 and BPHYT_RS22480 are separated by 197 nucleotidesBPHYT_RS22480 and BPHYT_RS22485 are separated by 16 nucleotides BPHYT_RS22475: BPHYT_RS22475 - NAD-glutamate dehydrogenase, at 597,453 to 602,294 _RS22475 BPHYT_RS22480: BPHYT_RS22480 - cytochrome C551, at 602,492 to 603,397 _RS22480 BPHYT_RS22485: BPHYT_RS22485 - NADP-dependent aryl-alcohol dehydrogenase, at 603,414 to 604,394 _RS22485 Position (kb) 602 603 604Strain fitness (log2 ratio) -1 0 1 2at 602.196 kb on + strandat 602.292 kb on + strandat 602.777 kb on + strand, within BPHYT_RS22480at 602.778 kb on - strand, within BPHYT_RS22480at 602.819 kb on + strand, within BPHYT_RS22480at 603.229 kb on + strand, within BPHYT_RS22480at 603.445 kb on + strandat 603.821 kb on - strand, within BPHYT_RS22485at 603.822 kb on + strand, within BPHYT_RS22485at 603.823 kb on - strand, within BPHYT_RS22485at 603.911 kb on - strand, within BPHYT_RS22485at 603.932 kb on - strand, within BPHYT_RS22485at 603.952 kb on - strand, within BPHYT_RS22485at 604.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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602,196 + -0.3
602,292 + +0.7
602,777 + BPHYT_RS22480 0.31 +0.2
602,778 - BPHYT_RS22480 0.32 -0.4
602,819 + BPHYT_RS22480 0.36 -0.8
603,229 + BPHYT_RS22480 0.81 -0.2
603,445 + +2.3
603,821 - BPHYT_RS22485 0.41 +0.2
603,822 + BPHYT_RS22485 0.42 -1.0
603,823 - BPHYT_RS22485 0.42 +0.7
603,911 - BPHYT_RS22485 0.51 +0.1
603,932 - BPHYT_RS22485 0.53 -0.1
603,952 - BPHYT_RS22485 0.55 +0.5
604,387 + -1.1

Or see this region's nucleotide sequence