Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4505

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
5,919,217	+				-1.5
5,919,245	-				-0.5
5,919,281	+				-1.0
5,919,391	-				-2.5
5,919,396	-				-0.7
5,919,402	-				-2.8
5,919,446	+				-1.9
5,919,447	-				+0.1
5,919,585	-		BT4504	0.22	-1.4
5,919,612	-		BT4504	0.26	+0.6
5,919,627	-		BT4504	0.28	-1.4
5,919,801	-		BT4504	0.54	-1.9
5,919,801	-		BT4504	0.54	+0.6
5,919,801	-		BT4504	0.54	-0.9
5,919,859	-		BT4504	0.62	-1.5
5,919,888	+		BT4504	0.67	-0.1
5,919,936	+		BT4504	0.74	-0.9
5,919,936	+		BT4504	0.74	-1.2
5,919,936	+		BT4504	0.74	+1.3
5,919,937	-		BT4504	0.74	+0.4
5,919,937	-		BT4504	0.74	+0.1
5,919,953	+		BT4504	0.76	+1.8
5,920,061	+				-1.2
5,920,062	-				-1.5
5,920,092	-				+2.1
5,920,107	-				-1.4
5,920,109	+				-0.9
5,920,218	+		BT4505	0.20	+0.3
5,920,218	+		BT4505	0.20	-2.6
5,920,218	+		BT4505	0.20	-1.9
5,920,219	-		BT4505	0.20	-0.9
5,920,219	-		BT4505	0.20	-2.3
5,920,219	-		BT4505	0.20	-1.5
5,920,366	+		BT4505	0.48	-1.4
5,920,366	+		BT4505	0.48	-1.5
5,920,381	+		BT4505	0.50	-3.6
5,920,382	-		BT4505	0.50	-2.4
5,920,426	-		BT4505	0.59	-1.6
5,920,426	-		BT4505	0.59	-0.6
5,920,438	+		BT4505	0.61	+0.6
5,920,494	+		BT4505	0.71	-1.8
5,920,494	+		BT4505	0.71	-0.4
5,920,587	-		BT4505	0.88	-1.4
5,920,642	+				-1.2
5,920,643	-				-1.6
5,920,668	+				+0.4
5,920,696	+				-0.5
5,920,842	-		BT4506	0.12	-2.2
5,920,842	-		BT4506	0.12	+0.7
5,920,846	+		BT4506	0.13	+0.5
5,920,847	-		BT4506	0.13	+0.4
5,920,888	+		BT4506	0.16	-0.5
5,920,985	+		BT4506	0.23	-1.3
5,921,007	+		BT4506	0.24	-0.5
5,921,009	+		BT4506	0.24	-0.0
5,921,087	+		BT4506	0.30	+0.4
5,921,087	+		BT4506	0.30	-0.3
5,921,110	+		BT4506	0.32	-1.2
5,921,123	+		BT4506	0.33	-0.3
5,921,141	+		BT4506	0.34	-2.1
5,921,141	+		BT4506	0.34	-2.4
5,921,142	-		BT4506	0.34	-2.3
5,921,146	-		BT4506	0.34	-1.3
5,921,189	+		BT4506	0.38	-1.6
5,921,318	+		BT4506	0.47	-2.2
5,921,352	-		BT4506	0.49	+0.3
5,921,361	+		BT4506	0.50	-0.9
5,921,361	+		BT4506	0.50	-0.3
5,921,361	+		BT4506	0.50	-1.3
5,921,440	-		BT4506	0.56	-0.7
5,921,440	-				+1.6
5,921,464	+		BT4506	0.58	-1.3
5,921,467	-		BT4506	0.58	-1.4