Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3471

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
4,469,701	+		BT3470	0.35	-1.2
4,469,706	-		BT3470	0.35	-0.7
4,469,747	-		BT3470	0.38	-0.2
4,469,747	-		BT3470	0.38	-0.9
4,469,770	-		BT3470	0.40	-1.4
4,469,893	-		BT3470	0.49	-2.0
4,469,893	-		BT3470	0.49	-1.2
4,469,919	+		BT3470	0.51	-1.0
4,469,931	+		BT3470	0.52	-1.4
4,469,932	-		BT3470	0.52	-3.3
4,470,008	-		BT3470	0.57	+0.6
4,470,009	+		BT3470	0.57	+0.1
4,470,046	+		BT3470	0.60	-1.2
4,470,118	-		BT3470	0.65	-0.7
4,470,204	+		BT3470	0.71	-1.5
4,470,234	+		BT3470	0.74	-1.1
4,470,235	-		BT3470	0.74	+0.1
4,470,235	-		BT3470	0.74	-2.4
4,470,236	+		BT3470	0.74	-0.9
4,470,236	+		BT3470	0.74	-0.4
4,470,236	+		BT3470	0.74	-0.2
4,470,237	-		BT3470	0.74	-0.4
4,470,237	-		BT3470	0.74	-2.0
4,470,237	-		BT3470	0.74	-0.9
4,470,260	+		BT3470	0.75	-1.0
4,470,268	+		BT3470	0.76	-1.5
4,470,376	-				+1.0
4,470,376	-		BT3470	0.84	+0.1
4,470,383	+		BT3470	0.84	-1.5
4,470,441	-		BT3470	0.89	-0.5
4,470,469	+				-1.1
4,470,494	-				-0.9
4,470,501	+				-0.4
4,470,506	+				+1.4
4,470,507	-				+0.5
4,470,672	+				-1.3
4,470,675	-				-0.4
4,470,679	+				-0.4
4,470,681	+				-0.7
4,470,730	-		BT3471	0.16	-1.8
4,470,739	+		BT3471	0.19	+3.6
4,470,743	+		BT3471	0.21	-2.3
4,470,743	+		BT3471	0.21	-1.4
4,470,743	+		BT3471	0.21	+0.8
4,470,762	+		BT3471	0.29	-1.1
4,470,764	+		BT3471	0.30	-1.2
4,470,765	-		BT3471	0.30	-1.2
4,470,765	-		BT3471	0.30	-1.6
4,470,803	+		BT3471	0.46	-0.9
4,470,824	-		BT3471	0.54	-0.4
4,470,828	+		BT3471	0.56	-0.1
4,470,828	+		BT3471	0.56	-0.7
4,470,829	-		BT3471	0.56	+1.0
4,470,837	-		BT3471	0.60	+0.6
4,470,868	+		BT3471	0.72	-0.8
4,470,926	-				-1.4
4,470,935	-				-0.2
4,471,045	-				-0.6
4,471,045	-				-1.0
4,471,052	+				-1.1
4,471,053	-				-0.4
4,471,055	+				-0.9
4,471,056	-				-0.2
4,471,095	+		BT3472	0.13	-1.9
4,471,411	+		BT3472	0.37	-0.4
4,471,412	-		BT3472	0.37	+0.6
4,471,415	+		BT3472	0.37	-1.4
4,471,416	-		BT3472	0.38	-2.3
4,471,417	+		BT3472	0.38	-0.9
4,471,426	+		BT3472	0.38	+1.6
4,471,465	-		BT3472	0.41	-2.4
4,471,467	+		BT3472	0.41	+0.7
4,471,467	+		BT3472	0.41	-0.7
4,471,565	+		BT3472	0.49	-2.2
4,471,572	+		BT3472	0.50	-0.8
4,471,643	+		BT3472	0.55	-1.7
4,471,667	-		BT3472	0.57	-3.2
4,471,701	+		BT3472	0.60	-1.1
4,471,702	-		BT3472	0.60	-1.6
4,471,712	+		BT3472	0.60	-0.8
4,471,712	+		BT3472	0.60	+0.1
4,471,713	-		BT3472	0.60	-0.0
4,471,764	+		BT3472	0.64	-0.9
4,471,764	+		BT3472	0.64	+0.1
4,471,765	-		BT3472	0.65	-0.4
4,471,773	+		BT3472	0.65	-1.8
4,471,782	+		BT3472	0.66	+0.6
4,471,828	+		BT3472	0.69	+0.8
4,471,828	+		BT3472	0.69	-1.6
4,471,829	-		BT3472	0.69	-7.2
4,471,859	-		BT3472	0.72	+1.1
4,471,897	+		BT3472	0.75	+0.6
4,471,907	-		BT3472	0.75	-0.5
4,471,924	+		BT3472	0.77	+0.8