Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2799

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
3,472,691	-		BT2798	0.48	-2.6
3,472,706	+		BT2798	0.48	+0.4
3,472,752	+		BT2798	0.51	-1.5
3,472,796	+		BT2798	0.54	-1.4
3,472,819	-		BT2798	0.55	-2.9
3,472,888	+		BT2798	0.59	-2.5
3,472,889	-		BT2798	0.59	-0.7
3,472,966	+		BT2798	0.64	-2.8
3,472,967	-		BT2798	0.64	-2.0
3,472,968	+		BT2798	0.64	-1.3
3,472,978	+		BT2798	0.64	-3.6
3,472,978	+		BT2798	0.64	-1.0
3,472,981	+		BT2798	0.65	-1.2
3,472,982	-		BT2798	0.65	+0.8
3,472,999	-		BT2798	0.66	+0.4
3,472,999	-		BT2798	0.66	-1.3
3,473,021	-		BT2798	0.67	-3.4
3,473,030	+		BT2798	0.67	-2.1
3,473,035	+		BT2798	0.68	-2.0
3,473,035	+		BT2798	0.68	-2.8
3,473,036	-		BT2798	0.68	-2.2
3,473,071	+		BT2798	0.70	+0.0
3,473,183	-		BT2798	0.77	-1.3
3,473,261	-		BT2798	0.81	-2.6
3,473,263	+		BT2798	0.81	-0.1
3,473,265	+		BT2798	0.81	-0.2
3,473,266	-		BT2798	0.81	-1.2
3,473,266	-		BT2798	0.81	-2.7
3,473,270	-		BT2798	0.82	-0.6
3,473,270	-		BT2798	0.82	-2.6
3,473,270	-		BT2798	0.82	-2.2
3,473,285	-		BT2798	0.83	-1.3
3,473,343	+		BT2798	0.86	-1.6
3,473,343	+		BT2798	0.86	-1.2
3,473,343	+		BT2798	0.86	-1.0
3,473,344	-		BT2798	0.86	-1.8
3,473,350	+		BT2798	0.86	-1.6
3,473,350	+		BT2798	0.86	-1.3
3,473,374	+		BT2798	0.88	-0.6
3,473,374	+		BT2798	0.88	-2.5
3,473,375	-		BT2798	0.88	-1.6
3,473,424	+				-1.5
3,473,425	-				-0.1
3,473,456	-				-2.4
3,473,528	-				-2.7
3,473,528	-				+0.6
3,473,528	-				-1.1
3,473,534	+				-1.8
3,473,535	-				+0.2
3,473,556	-				+0.4
3,473,628	-				+1.6
3,473,654	+				-1.2
3,473,863	-		BT2799	0.24	+0.2
3,473,874	+		BT2799	0.25	-0.3
3,473,877	-		BT2799	0.25	-1.3
3,473,904	+		BT2799	0.28	+0.9
3,474,005	+		BT2799	0.38	+0.6
3,474,009	+				-0.7
3,474,150	-		BT2799	0.53	+0.5
3,474,151	+		BT2799	0.53	+0.7
3,474,161	+		BT2799	0.54	-0.2
3,474,161	+		BT2799	0.54	-1.1
3,474,162	-		BT2799	0.54	-0.2
3,474,167	+		BT2799	0.55	+0.5
3,474,227	+		BT2799	0.61	+0.1
3,474,241	-		BT2799	0.62	-0.3
3,474,529	+				-6.1
3,474,530	-				-0.3
3,474,574	+				+0.0
3,474,574	+				-0.6
3,475,059	-				-0.8
3,475,063	+				-0.6
3,475,076	+				-1.9
3,475,100	+				-0.9
3,475,100	+				-0.2
3,475,122	+				-2.0
3,475,142	+				-0.7
3,475,179	+				-1.1
3,475,198	-				+0.8
3,475,201	+				+0.1
3,475,201	+				+0.3
3,475,201	+				-0.9
3,475,201	+				-1.1
3,475,202	-				+0.0
3,475,224	-				-0.8
3,475,224	-				-1.6
3,475,224	-				-0.2
3,475,228	+				-0.6
3,475,229	-				-1.6
3,475,229	-				-0.7
3,475,229	-				+0.0
3,475,246	-				+1.7
3,475,252	+				-0.5
3,475,253	-				-1.0
3,475,257	-				+0.8
3,475,364	+		BT2800	0.10	+0.0
3,475,369	+		BT2800	0.11	+0.4
3,475,406	+		BT2800	0.16	-0.2
3,475,406	+		BT2800	0.16	-0.6
3,475,406	+		BT2800	0.16	-0.1
3,475,407	-		BT2800	0.16	-1.1
3,475,407	-		BT2800	0.16	+0.7
3,475,475	+		BT2800	0.26	-0.2
3,475,517	+		BT2800	0.32	-1.4
3,475,518	-		BT2800	0.32	-1.0
3,475,518	-				-2.0
3,475,550	+		BT2800	0.36	-0.3
3,475,590	+		BT2800	0.42	-1.6
3,475,599	-		BT2800	0.43	-0.5