Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2072

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
2,593,368	+		BT2071	0.24	+1.7
2,593,368	+		BT2071	0.24	-0.2
2,593,369	-		BT2071	0.24	-2.3
2,593,428	-		BT2071	0.29	-0.9
2,593,463	+		BT2071	0.32	+1.7
2,593,486	-		BT2071	0.34	-1.6
2,593,784	+		BT2071	0.59	-1.5
2,593,785	-		BT2071	0.59	-1.2
2,593,832	+		BT2071	0.63	-1.7
2,593,832	+		BT2071	0.63	-1.3
2,593,832	+		BT2071	0.63	-0.9
2,593,833	-		BT2071	0.63	-0.5
2,593,833	-		BT2071	0.63	-1.5
2,593,834	+		BT2071	0.63	-3.3
2,593,835	-		BT2071	0.63	-2.0
2,593,835	-		BT2071	0.63	-1.6
2,593,835	-		BT2071	0.63	-1.9
2,593,835	-		BT2071	0.63	-2.3
2,593,837	-		BT2071	0.63	-2.1
2,593,837	-		BT2071	0.63	-0.5
2,593,837	-		BT2071	0.63	-0.3
2,593,846	-		BT2071	0.64	-0.3
2,594,211	+				-1.2
2,594,213	+				-3.3
2,594,213	+				+0.5
2,594,213	+				-0.2
2,594,214	-				-2.8
2,594,248	-				-0.3
2,594,248	-				-2.0
2,594,266	+				-1.5
2,594,347	+				-0.6
2,594,348	-				-2.0
2,594,351	+				-2.3
2,594,351	+				+0.3
2,594,351	+				-1.1
2,594,352	-				-1.7
2,594,499	-				-4.9
2,594,702	-		BT2072	0.18	-1.9
2,594,766	+		BT2072	0.21	-1.6
2,594,772	-		BT2072	0.21	-1.7
2,594,843	+		BT2072	0.25	+0.4
2,594,877	-		BT2072	0.26	-1.8
2,594,883	+		BT2072	0.26	-0.2
2,594,885	+		BT2072	0.26	-1.2
2,594,981	+		BT2072	0.31	-0.7
2,595,239	+		BT2072	0.42	-0.3
2,595,533	+		BT2072	0.55	-0.9
2,595,534	-		BT2072	0.55	-2.3
2,595,570	-		BT2072	0.57	-1.8
2,595,715	+		BT2072	0.63	-0.3
2,595,716	-		BT2072	0.63	-0.3
2,595,716	-		BT2072	0.63	-1.2
2,595,716	-		BT2072	0.63	-1.3
2,595,719	+		BT2072	0.64	-1.9
2,595,755	+		BT2072	0.65	-0.8
2,595,763	-		BT2072	0.66	-0.3
2,595,763	-		BT2072	0.66	-2.2
2,595,832	+		BT2072	0.69	-0.5
2,595,861	+		BT2072	0.70	-0.5
2,595,991	-		BT2072	0.76	-3.0
2,596,065	+		BT2072	0.79	-0.7
2,596,105	-		BT2072	0.81	-1.2
2,596,162	-		BT2072	0.83	-1.6
2,596,235	-		BT2072	0.87	-0.8
2,596,369	+				-1.3
2,596,423	+				-0.7
2,596,424	-				-2.0
2,596,490	+				-1.8
2,596,529	-				-0.7
2,596,529	-				-0.6
2,596,535	+				-2.0
2,596,558	+				-1.7
2,596,611	-				-0.9
2,596,658	+				+0.7
2,596,719	+				+0.4
2,596,720	-				+0.1
2,596,852	+		BT2073	0.13	-1.2
2,596,856	+		BT2073	0.14	-0.7
2,596,859	+		BT2073	0.14	-0.7
2,596,950	+		BT2073	0.18	-0.5
2,597,085	+		BT2073	0.25	-0.4
2,597,194	+		BT2073	0.31	-1.2
2,597,195	-		BT2073	0.31	-1.3
2,597,254	+		BT2073	0.34	+1.2
2,597,254	+		BT2073	0.34	-1.2
2,597,255	-		BT2073	0.34	-0.6
2,597,307	-		BT2073	0.37	-1.5
2,597,328	+		BT2073	0.38	+0.8
2,597,448	-		BT2073	0.44	-0.7
2,597,481	+		BT2073	0.45	-2.9